PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g17610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 365aa MW: 40186.7 Da PI: 9.8774 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.8 | 1.4e-28 | 51 | 159 | 3 | 103 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+ k i++l+ +++++ + ++ s+ s+ + Vradi07g17610.1 51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQfH-QQTPLSGT-SQFSlgslydg 142 78*************************************************************6666533321.11111111.11112234444 PP TCP 89 ........kaaksaakskksqks 103 +++ ++ Vradi07g17610.1 143 vnssflkdG------GNQNLMTK 159 432222220......22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.666 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.1E-27 | 52 | 175 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MMNESSSKVQ QGNQQEGENI KIEKLSKAAS TSRSWSAFRN PRIVRVSRSL GGKDRHSKVC 60 TIRGLRDRRI RLSVPTAIQL YDLQDKLGLN QPSKVVDWLL EVTKSDIDKL PPLQFPHCFA 120 QFHQQTPLSG TSQFSLGSLY DGVNSSFLKD GGNQNLMTKS TRYWDLDSQN RTELAESVST 180 SQKGKFWIKP NELENHQNGI VGTSTRNREE SSAHCKVFPL GTNSSYLPGL SNNAITHNSY 240 HHSEPSTLSL SHLGSHELFP SHPSTGSSVQ FSSSNFCGAS GPQLLFSPPS ATPSAFYSVE 300 SDPRQSNSIQ IFSSSSQVMM PHPLIQSIHS TTSPLRRLPT SLSSKLFDSD NTDRSQQGKG 360 STRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g17610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507956.1 | 0.0 | transcription factor TCP5 | ||||
Refseq | XP_022639356.1 | 0.0 | transcription factor TCP5 | ||||
TrEMBL | A0A1S3UPG3 | 0.0 | A0A1S3UPG3_VIGRR; transcription factor TCP5 | ||||
STRING | XP_007155224.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-52 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |