PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g17040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Nin-like | ||||||||
Protein Properties | Length: 288aa MW: 33796.3 Da PI: 4.5082 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.8 | 1.6e-26 | 138 | 187 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++s e++s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ sl Vradi07g17040.1 138 RKLSRETISEYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSL 187 6899*******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.132 | 122 | 207 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.4E-21 | 140 | 187 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MIMDSHPLMS WSSYYQIEEK PLPFTCQFSY SENSEVYPPP LHDLPIQDCY QGAVPLTEYY 60 PSDPLYETLA IELTPTLRAD CDFYDISKEL SVWNEVNAVF DSEVDLLFRN KEESLKEMVD 120 DSKVNEGREE ITNPRNSRKL SRETISEYFY MPITQAAREL NVGLTLLKKR CRELGIRRWP 180 HRKLMSLQTL INNVQELLKE EGPESEEKLR FAIETLEKEK KLLEEMPDIE LEDNTKRLRQ 240 ACFKANYKKR KLGQREPDCS SWSGVMSEYN NESEEELDMK YLISQLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g17040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-167 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022638516.1 | 0.0 | protein RKD2-like | ||||
TrEMBL | A0A3Q0F4T8 | 0.0 | A0A3Q0F4T8_VIGRR; protein RKD2-like | ||||
STRING | XP_007155308.1 | 1e-151 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6184 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-44 | RWP-RK domain-containing protein |