PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g16660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 340aa    MW: 38290.9 Da    PI: 7.6239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g16660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.3e-31632261128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpk......................kvkaeekewyfFs 62 
                      lp G++F+P+d+e++ e+L++kv ++       ++  e   +++   +i++++P++Lp                        v+++ +  +fF+
  Vradi07g16660.1  63 LPSGVKFDPNDQEIL-EHLEAKVLSDVpklhplID--EfipTLEGEnGICYTHPEKLPGcvshfsskksrtngrskpnlvaGVSKDGQIRHFFH 153
                      699***********9.99****9999856643322..22222333336**********55899999999988888887654443444556**** PP

              NAM  63 krdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +k+y+tg+rk+r+++      + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Vradi07g16660.1 154 RPSKAYTTGTRKRRKVHtdeegsETRWHKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 226
                      **************744446555778************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3258245IPR003441NAC domain
PROSITE profilePS5100530.39963245IPR003441NAC domain
PfamPF023652.5E-1464226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTWCNDSDEE RGIELVAPTI TPATNNTLVT DTKQTENRTI TCPSCGHNIE FQDQTGINDL  60
PGLPSGVKFD PNDQEILEHL EAKVLSDVPK LHPLIDEFIP TLEGENGICY THPEKLPGCV  120
SHFSSKKSRT NGRSKPNLVA GVSKDGQIRH FFHRPSKAYT TGTRKRRKVH TDEEGSETRW  180
HKTGKTRPVF VGGAVKGFKK ILVLYTNYGR QKKPEKTNWV MHQYHLGSNE EEKDGELVVS  240
KVFYQTQPRQ CGTSIIKQDL YDEERLTNQG VVDDDNIVPR SATLMEYYNN TSFINYEHVG  300
GRNNRETSPQ LIPNLVMQGD SSSFIRLAMD ATKARLNTK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g16660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507257.10.0NAC domain-containing protein 73
RefseqXP_014507258.10.0NAC domain-containing protein 73
SwissprotO494591e-118NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1S3UMG50.0A0A1S3UMG5_VIGRR; NAC domain-containing protein 73
STRINGGLYMA07G32250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-121NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]