PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g16610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HB-other | ||||||||
Protein Properties | Length: 1801aa MW: 201468 Da PI: 5.2713 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 48 | 103 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk Vradi07g16610.1 48 PKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKK 103 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 27 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-17 | 35 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.649 | 44 | 104 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-18 | 46 | 108 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 48 | 103 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.87E-12 | 49 | 98 | No hit | No description |
PROSITE profile | PS50827 | 16.1 | 558 | 617 | IPR018501 | DDT domain |
SMART | SM00571 | 4.5E-20 | 558 | 617 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.3E-16 | 560 | 614 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.7E-16 | 740 | 808 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.2E-8 | 946 | 987 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.0E-12 | 1126 | 1198 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1801 aa Download sequence Send to blast |
MEGEACSEGE NNRKRGGTDD DSNENNNNNS NHGISSKIVN SNEGQSKPKR QMKTPFQLET 60 LEKAYAVDNY PSETMRGELS EKLGLSDRQL QMWFCHRRLK DKKDLSSKKV PRKVVAEPLP 120 ESPTDDPMLG PPELGNEYGS GSGSGSSPYA RVEPLNIVPR GVPGYYESPR AMMESRAIAC 180 VEAQLGEPLR EDGPILGVEF DPLPPDAFGA PLAATEQQKL PSFTYDSKIY ERHDSRANKA 240 MARTFRDYRS LPTQPGTRSD TSGPFSKSHL HDAMEGPARN LHLALGNETV PRIRPSQGQF 300 RARLLSQQDK QLIPYQSPTR DDNAAPIREL DPAILNVGTS SHFADHQVVV PENLHAQPSG 360 QVLHNNNAIR IEKKRKSDDV RDVEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK 420 KEEERLMRER QREEEKARRE QKREIERREK FLLKENLRAE KMKIREELRK EKEAERRKAA 480 LEKATARRIA KESMELIEDE QLEMMELAAS SKGLSSIIHL DFDTLQHIES FRDSLCVFPP 540 KSVKLRKPFA IKPWINSEKN VGNLLMVWRF LITFADVLEL WSFTLDEFVQ AFHDYDSRLL 600 GEIHVALLKV VIKDIEDVAR TPSTGLGSNQ NGAANAGGGH PEIVEGAYAW GFDIRNWHKH 660 LNLLTWPEIF RQLALSAGYG PQLKKRSATC SYANNKDEGK SCEDIISKLR NGSAAENAVA 720 KMHERGLLAP RRSRHRLTPG TVKFAAFHVL SLEGDKGLTV LELAEKIQKS GLRDLTTSKT 780 PEASISVALT RDTKLFERIA PSTYCVRQAF RKNPADAESI LSEARKKIQI FENGFLAEED 840 TDDVEREESE SDEIDEDPEV DDLVNLSSAN KTSEPCDDFS SNGKENLGHD VGLQGEFDKD 900 LPHFPESSSK KVDTPIAVTG KPGACEVLNV GNLGEDNMEI DESKPGESWV QGLAEGEYSD 960 LSVEERLSAL VVLVGVANEG NSIRIVLEDR LEAANALKKQ MWAEAQLDKF RLKDDIFSKS 1020 DFPSLNGNKV EIQYSCPTVE GNQSPSLLGI NIGNNSNVVP SPSTAENQKA TPGVQSLSVE 1080 KHSSVQDLCT GPDNPQIQTF AQYSKRSRSQ LKSYIFHIAE EMCAYRSLPL GQDRRRNRYW 1140 QFVASASSND PGSGRIFVEF LDGNWRLIDT EEAFDVLLNS LDSRGVRESH LRLMLQKVEG 1200 SFKENVRNNT QCSKAGSRGE THVKNEADEA DSSPDRHTGS DSPSSTLCGL NSDSLETSSS 1260 FKIELGKSES DKKSALRRYQ DFQKWTWKEC YNSSILCAMK YGKKRCKPQV VVCEICLNPY 1320 FYEDSHCSCC HRTFPSNNGF NFSKHAFQCG DKLSKEICVL DSSLPLRTRL LKALLAYIEV 1380 SIPPEAFQAT WIEDIRRHWS VKLNKSSSVE ELLQILALLE RALKRDFLSS TFSTTGEQLG 1440 LNTVSESAAQ TSADPESVAV LPWVPLTTSA VSLRLFEFDE SIVYVLHEKP EPREEKEDRQ 1500 YIKLPSRHNA SKSIKVSETA DMGRNEFMKV KSNTVKIVQS NNKRGRGSAL KGRSKNISKT 1560 KQNNGRRHSA KVAGNLNQRV KQQGGGSQGQ AGARGRRTVR KRRMGKKVVE DLLLGHRGAS 1620 RSNNIARESL RSLDEDWDDQ KGSPMTPIHM GTANISNSTE EAESDDNVQA MESDDNVQAV 1680 ESDDNGQAVE SDDNGQAMES DDNGQAVESD DNGQAVEYDQ GNWEIGFNGN PSRWQGDLVG 1740 TSDEDIEASE DDNHNDNGIE ENEEEDSEGD IMSEGSDGTA NRIVNEEESS DSDVSEDSSD 1800 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 103 | RRLKDKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g16610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508807.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
TrEMBL | A0A1S3US48 | 0.0 | A0A1S3US48_VIGRR; homeobox-DDT domain protein RLT1 isoform X2 | ||||
STRING | XP_007159367.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |