PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g16610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 1801aa    MW: 201468 Da    PI: 5.2713
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g16610.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1848103257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       kR+  t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk
  Vradi07g16610.1  48 PKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKK 103
                      69****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-1827103IPR009057Homeodomain-like
SuperFamilySSF466899.41E-1735103IPR009057Homeodomain-like
PROSITE profilePS5007116.64944104IPR001356Homeobox domain
SMARTSM003894.5E-1846108IPR001356Homeobox domain
PfamPF000463.1E-1648103IPR001356Homeobox domain
CDDcd000861.87E-124998No hitNo description
PROSITE profilePS5082716.1558617IPR018501DDT domain
SMARTSM005714.5E-20558617IPR018501DDT domain
PfamPF027913.3E-16560614IPR018501DDT domain
PfamPF050662.7E-16740808IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.2E-8946987IPR028942WHIM1 domain
PfamPF156132.0E-1211261198IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1801 aa     Download sequence    Send to blast
MEGEACSEGE NNRKRGGTDD DSNENNNNNS NHGISSKIVN SNEGQSKPKR QMKTPFQLET  60
LEKAYAVDNY PSETMRGELS EKLGLSDRQL QMWFCHRRLK DKKDLSSKKV PRKVVAEPLP  120
ESPTDDPMLG PPELGNEYGS GSGSGSSPYA RVEPLNIVPR GVPGYYESPR AMMESRAIAC  180
VEAQLGEPLR EDGPILGVEF DPLPPDAFGA PLAATEQQKL PSFTYDSKIY ERHDSRANKA  240
MARTFRDYRS LPTQPGTRSD TSGPFSKSHL HDAMEGPARN LHLALGNETV PRIRPSQGQF  300
RARLLSQQDK QLIPYQSPTR DDNAAPIREL DPAILNVGTS SHFADHQVVV PENLHAQPSG  360
QVLHNNNAIR IEKKRKSDDV RDVEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK  420
KEEERLMRER QREEEKARRE QKREIERREK FLLKENLRAE KMKIREELRK EKEAERRKAA  480
LEKATARRIA KESMELIEDE QLEMMELAAS SKGLSSIIHL DFDTLQHIES FRDSLCVFPP  540
KSVKLRKPFA IKPWINSEKN VGNLLMVWRF LITFADVLEL WSFTLDEFVQ AFHDYDSRLL  600
GEIHVALLKV VIKDIEDVAR TPSTGLGSNQ NGAANAGGGH PEIVEGAYAW GFDIRNWHKH  660
LNLLTWPEIF RQLALSAGYG PQLKKRSATC SYANNKDEGK SCEDIISKLR NGSAAENAVA  720
KMHERGLLAP RRSRHRLTPG TVKFAAFHVL SLEGDKGLTV LELAEKIQKS GLRDLTTSKT  780
PEASISVALT RDTKLFERIA PSTYCVRQAF RKNPADAESI LSEARKKIQI FENGFLAEED  840
TDDVEREESE SDEIDEDPEV DDLVNLSSAN KTSEPCDDFS SNGKENLGHD VGLQGEFDKD  900
LPHFPESSSK KVDTPIAVTG KPGACEVLNV GNLGEDNMEI DESKPGESWV QGLAEGEYSD  960
LSVEERLSAL VVLVGVANEG NSIRIVLEDR LEAANALKKQ MWAEAQLDKF RLKDDIFSKS  1020
DFPSLNGNKV EIQYSCPTVE GNQSPSLLGI NIGNNSNVVP SPSTAENQKA TPGVQSLSVE  1080
KHSSVQDLCT GPDNPQIQTF AQYSKRSRSQ LKSYIFHIAE EMCAYRSLPL GQDRRRNRYW  1140
QFVASASSND PGSGRIFVEF LDGNWRLIDT EEAFDVLLNS LDSRGVRESH LRLMLQKVEG  1200
SFKENVRNNT QCSKAGSRGE THVKNEADEA DSSPDRHTGS DSPSSTLCGL NSDSLETSSS  1260
FKIELGKSES DKKSALRRYQ DFQKWTWKEC YNSSILCAMK YGKKRCKPQV VVCEICLNPY  1320
FYEDSHCSCC HRTFPSNNGF NFSKHAFQCG DKLSKEICVL DSSLPLRTRL LKALLAYIEV  1380
SIPPEAFQAT WIEDIRRHWS VKLNKSSSVE ELLQILALLE RALKRDFLSS TFSTTGEQLG  1440
LNTVSESAAQ TSADPESVAV LPWVPLTTSA VSLRLFEFDE SIVYVLHEKP EPREEKEDRQ  1500
YIKLPSRHNA SKSIKVSETA DMGRNEFMKV KSNTVKIVQS NNKRGRGSAL KGRSKNISKT  1560
KQNNGRRHSA KVAGNLNQRV KQQGGGSQGQ AGARGRRTVR KRRMGKKVVE DLLLGHRGAS  1620
RSNNIARESL RSLDEDWDDQ KGSPMTPIHM GTANISNSTE EAESDDNVQA MESDDNVQAV  1680
ESDDNGQAVE SDDNGQAMES DDNGQAVESD DNGQAVEYDQ GNWEIGFNGN PSRWQGDLVG  1740
TSDEDIEASE DDNHNDNGIE ENEEEDSEGD IMSEGSDGTA NRIVNEEESS DSDVSEDSSD  1800
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRLKDKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g16610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508807.10.0homeobox-DDT domain protein RLT1 isoform X2
TrEMBLA0A1S3US480.0A0A1S3US48_VIGRR; homeobox-DDT domain protein RLT1 isoform X2
STRINGXP_007159367.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1