PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g16030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 354aa    MW: 39208.7 Da    PI: 8.7444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g16030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.28e-54151421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yLk+k+++++l++  +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+
  Vradi07g16030.1  15 LPPGFRFHPTDEELVVHYLKRKASSTPLPV-AIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPILT 107
                      79****************************.88***************8888999**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Vradi07g16030.1 108 SdGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
                      967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-6510178IPR003441NAC domain
PROSITE profilePS5100561.54715178IPR003441NAC domain
PfamPF023653.0E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDSTDSSSGS QHPHLPPGFR FHPTDEELVV HYLKRKASST PLPVAIIADV DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPILTSDG HQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLVHDSFNST SKPPPLVPPN KKNSLRLDDW VLCRIYKKSN  180
STTVTRPPLM EHGEELSMEN MLPTMSTLSM ANNNTQNSKP PSSRSTSYGA LGLENDDNFF  240
DGILAVDHQS MQSGSDSHLF CPNSKGTNFP MKRALTSQQL WNETGSPGSS SSCKRFHGDL  300
NSGSSNAEDN DSFVSLLSQF PQNATFQPNA IHGSVGNGAQ RQQQFQLPGI NWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-751518217169NO APICAL MERISTEM PROTEIN
1ut4_B5e-751518217169NO APICAL MERISTEM PROTEIN
1ut7_A5e-751518217169NO APICAL MERISTEM PROTEIN
1ut7_B5e-751518217169NO APICAL MERISTEM PROTEIN
3swm_A7e-751518220172NAC domain-containing protein 19
3swm_B7e-751518220172NAC domain-containing protein 19
3swm_C7e-751518220172NAC domain-containing protein 19
3swm_D7e-751518220172NAC domain-containing protein 19
3swp_A7e-751518220172NAC domain-containing protein 19
3swp_B7e-751518220172NAC domain-containing protein 19
3swp_C7e-751518220172NAC domain-containing protein 19
3swp_D7e-751518220172NAC domain-containing protein 19
4dul_A5e-751518217169NAC domain-containing protein 19
4dul_B5e-751518217169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g16030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507108.10.0NAC transcription factor 25
SwissprotQ8GY421e-111NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A1S3UM140.0A0A1S3UM14_VIGRR; NAC transcription factor 25
STRINGXP_007159283.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-106NAC domain containing protein 25