PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g14790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 190aa MW: 21854.7 Da PI: 9.1823 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEd l ++vk++G+g W++I++ g++R++k+c++rw +yl Vradi07g14790.1 10 KGFWNAEEDSVLTNYVKKHGTGKWNRIPKVTGLKRSGKSCRLRWMNYL 57 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l v+++ +lG++ W++Ia +++ gRt++q+k++w+++l Vradi07g14790.1 63 RGEFSEEEEDLVVRLHSLLGNR-WSLIAGRIP-GRTDNQVKNFWNTHL 108 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.691 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-30 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 11 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.34E-11 | 13 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 13 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.459 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 63 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.91E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0090377 | Biological Process | seed trichome initiation | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MEAYENESKK GFWNAEEDSV LTNYVKKHGT GKWNRIPKVT GLKRSGKSCR LRWMNYLTPD 60 VKRGEFSEEE EDLVVRLHSL LGNRWSLIAG RIPGRTDNQV KNFWNTHLSK KLGVVDKKKK 120 KRKASSKERS GEGDGEKLWS DDLMELGNMH EEIIRDDFGC SFSFPNISVF DLCTSPYCTQ 180 SFHHSFFAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 10 | 112 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | KKKKKRK |
2 | 117 | 122 | KKKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g14790.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 8e-61 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022638520.1 | 1e-139 | transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 8e-61 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A3Q0F3B7 | 1e-138 | A0A3Q0F3B7_VIGRR; transcription factor WER-like | ||||
STRING | XP_007155422.1 | 1e-105 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-56 | myb domain protein 66 |