PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g14230.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 328aa    MW: 36991.3 Da    PI: 7.6282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g14230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-12152198455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L  l+P +     +K +Ka+iL  A+ ++k+Lq
  Vradi07g14230.1 152 DHIIAERKRREKLSQRFIALSALVPGL-----QKTDKASILGDAISHLKQLQ 198
                      6999**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.586148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16152216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-12153202No hitNo description
PfamPF000101.1E-9153198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-15154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDSNLLRQW HLSSIDDPNL LPMASTFEET FQQHAFTYPD FNPKASMETT LMDIERPTKH  60
HKNISWNPIK SSAQTSDAQY VSFPNLLSFM DSNHISPLGL VKANEVACPI TNSTTSLDTF  120
SQGILGNHNY LFKACQETKK NGRRSKISHP QDHIIAERKR REKLSQRFIA LSALVPGLQK  180
TDKASILGDA ISHLKQLQEK VKALEEAQNM KKTVESVVIV KKSQLSYDVN NSSEYDGPLF  240
DETMPEIEAR FCGRNVLIRV HCEKTKGVVE KTIHEIENLH LKVTNSNAMA FGRCAIDMTI  300
IAQMDIEFCM GVKDVVRNLR SAFTSFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13150217674Transcription factor MYC2
5gnj_B2e-13150217674Transcription factor MYC2
5gnj_E2e-13150217674Transcription factor MYC2
5gnj_F2e-13150217674Transcription factor MYC2
5gnj_G2e-13150217674Transcription factor MYC2
5gnj_I2e-13150217674Transcription factor MYC2
5gnj_M2e-13150217674Transcription factor MYC2
5gnj_N2e-13150217674Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g14230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022638476.10.0transcription factor bHLH25 isoform X1
RefseqXP_022638477.10.0transcription factor bHLH25 isoform X2
SwissprotQ9T0724e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3Q0F4P90.0A0A3Q0F4P9_VIGRR; transcription factor bHLH25 isoform X1
TrEMBLA0A3Q0F7T80.0A0A3Q0F7T8_VIGRR; transcription factor bHLH25 isoform X2
STRINGXP_007159189.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-58bHLH family protein