PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g13300.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 181aa    MW: 19734.1 Da    PI: 4.7147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g13300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2445.5e-141361255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r ++  g+Wv eIr+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  Vradi07g13300.1 13 LYHGIR-CR-GGKWVTEIREPRK---TNRIWLGTFLTPEMAAAAYDVAALALKG 61
                     699999.55.7*********854...49**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.65E-131271No hitNo description
PfamPF008471.0E-71261IPR001471AP2/ERF domain
PROSITE profilePS5103218.3071369IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-161371IPR016177DNA-binding domain
SMARTSM003807.2E-241375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-241371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASSSSSSKR HPLYHGIRCR GGKWVTEIRE PRKTNRIWLG TFLTPEMAAA AYDVAALALK  60
GGEAVLNFPD SVGRYPVPAS KSPEDIRTAA IAAAELMKPE ASHNNVNAVA QSDNTEGYDY  120
AYHNVVGPSY ETEFVDEEAI FSMPSLLVDM AEGMLLTPPR MSSPSDYWTE NSAGENLWNF  180
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g13300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508518.11e-132ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN95e-45ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A1S3UR061e-131A0A1S3UR06_VIGRR; ethylene-responsive transcription factor ERF026-like
STRINGXP_007155566.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-44ERF family protein