PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g12400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 199aa    MW: 22943.6 Da    PI: 7.1007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g12400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.77.4e-201764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+++++ +G ++WktIa + g++R++k+c++rw++yl
  Vradi07g12400.1 17 RGSWTPEEDRKLAQCIQFHGAKRWKTIAVKSGLNRCGKSCRLRWLNYL 64
                     89********************************************97 PP
2Myb_DNA-binding52.21.4e-1670115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + eE++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Vradi07g12400.1  70 RGNISDEEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7091264IPR017930Myb domain
SuperFamilySSF466891.13E-2915111IPR009057Homeodomain-like
SMARTSM007175.0E-161666IPR001005SANT/Myb domain
PfamPF002491.5E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-251871IPR009057Homeodomain-like
CDDcd001671.58E-111964No hitNo description
PROSITE profilePS5129424.91465119IPR017930Myb domain
SMARTSM007175.0E-1469117IPR001005SANT/Myb domain
PfamPF002495.0E-1570115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2572120IPR009057Homeodomain-like
CDDcd001674.68E-1174115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAPRINDATP NRSPMNRGSW TPEEDRKLAQ CIQFHGAKRW KTIAVKSGLN RCGKSCRLRW  60
LNYLRPNIKR GNISDEEEDL ILRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNSHLCKKVN  120
QREERPESST THEIVGQNQN HGDNLALSEN EVATKDIGNL DVTFDIDEFF NFSEESCGLD  180
WLNKYLELDH IPQTTENS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291511925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g12400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-157AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508468.11e-146transcription factor MYB114
SwissprotQ388506e-49MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A1S3UQV81e-145A0A1S3UQV8_VIGRR; transcription factor MYB114
STRINGXP_007155685.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-51myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]