PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g12280.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 197aa MW: 22113 Da PI: 9.4153

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g12280.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.2e-19	141	188	2	52
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a ++ Vradi07g12280.1 141 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDHAVNA 188 8******.******96655..******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.08E-23	140	185	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.8E-25	140	189	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.08E-17	141	188	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.098	141	196	IPR001471	AP2/ERF domain
Pfam	PF00847	2.4E-12	141	186	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-20	141	196	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.4E-11	142	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.4E-11	165	181	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MANAAELSAL NRIKLHLLGE LSPLATPQNN QPSFQFNQTN QSPSQSSSSD SCLSFNHYLT 60 DLLDPQIQLP LFEFDSKPQI IDLDTPKPLT SLHKKPQLNR KPSLQISLPK KTEWIQFGKP 120 DPNPPVVLPE NQPENQPEKK HYRGVRQRPW GKFAAEIRDP NKRGSRVWLG TFDTAIEAAK 180 AYDHAVNAVY VDRVLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-21	140	195	1	56	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00549	DAP	Transfer from AT5G47230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g12280.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-177	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014507066.1	1e-132	ethylene-responsive transcription factor 5
Swissprot	O80341	2e-41	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	A0A1S3ULY1	1e-131	A0A1S3ULY1_VIGRR; ethylene-responsive transcription factor 5
STRING	GLYMA05G05130.1	2e-85	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	5e-42	ethylene responsive element binding factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]