PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g11310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 293aa MW: 31847.7 Da PI: 10.2828 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.3e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Vradi07g11310.1 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55 79***********************************9***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.774 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.8E-15 | 2 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.68E-17 | 6 | 57 | No hit | No description |
SMART | SM00526 | 7.7E-9 | 104 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 21.583 | 118 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.8E-15 | 124 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.3E-13 | 124 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 6.3E-8 | 127 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKRSLPAPK IDNNHMALST VVQHDEVLDT KPLAVSGGPL QSPNFKEQIS 120 RLVDNHILEA IVNMKEQKGS DKGAIISYME EKYRCPPNIS KLLSTKLKHM VASGKIIKEK 180 HRYRIASSSA VSEKRRSSSL EGRSKDHSEA NKNDDVNILS KSQIDKEISK VKGLTAQEAA 240 AAAAKAVAEA EAAIAQAEAA AREAEAAEAE AEAAQVFAKA AMKALKCKML HI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g11310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-170 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505622.1 | 0.0 | telomere repeat-binding factor 2 isoform X2 | ||||
Swissprot | Q9FJW5 | 6e-75 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A1S3UHW2 | 0.0 | A0A1S3UHW2_VIGRR; telomere repeat-binding factor 2 isoform X2 | ||||
STRING | XP_007155823.1 | 1e-168 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 8e-68 | MYB_related family protein |
Publications ? help Back to Top | |||
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