PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10630.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 341aa    MW: 37873.7 Da    PI: 7.3717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-1698144455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Vradi07g10630.1  98 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 144
                      6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-2091157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-2091163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.89894143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-1397139No hitNo description
PfamPF000109.8E-1498144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSSSSSSSHD QISLPLPHTL LPSSLTTHQG NPPRNPIPIS MLHFCTSKTA QHNALRDGIS  60
PYNPSSAIDC EALVEEVPIP SKCFRSGSSS KRSRAAEVHN LSEKRRRSRI NEKLKALQNL  120
IPNSNKTDKA SMLDEAIEYL KQLQLQVQQM LSMRNGLSLH PMFFPEGLQP QQLSQMRMDS  180
SEENRSIPSN TTATLPMQQE NPMPYSSNMA NKQIVADQPS MTTPSYIFNS ETSFRLESHI  240
SDNIRSFQHR GFSEICREDI LQHHTNPLVS SQGALATASV SFDMQKSAVK DSSSLGNCIP  300
GSDQSRLMLR NNGEHAHEIL LDFSLEFLCL YAAQFIASCR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-84AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506484.10.0transcription factor PIF4 isoform X2
TrEMBLA0A1S3UKM40.0A0A1S3UKM4_VIGRR; transcription factor PIF4 isoform X2
STRINGXP_007155915.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-28bHLH family protein