PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g10520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HSF | ||||||||
Protein Properties | Length: 254aa MW: 28030.3 Da PI: 6.9066 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 118.3 | 4.4e-37 | 10 | 101 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y +++d++++++iswse+gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk+g+kell+ Vradi07g10520.1 10 FLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANECFKRGQKELLT 94 9****************************************************************999.........***************** PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +ikr+k+ Vradi07g10520.1 95 EIKRRKT 101 *****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.58E-35 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.2E-62 | 6 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-39 | 6 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-32 | 10 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-21 | 10 | 33 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-21 | 48 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 49 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-21 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.370 | 3.5E-4 | 142 | 175 | IPR014751 | DNA repair protein XRCC4, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006302 | Biological Process | double-strand break repair | ||||
GO:0006310 | Biological Process | DNA recombination | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSQRSTPAPF LTKTYLLVDD PATDDVISWS ETGNTFVVWK HADFAKDLLP KYFKHNNFSS 60 FVRQLNTYGF RKIVPDKWEF ANECFKRGQK ELLTEIKRRK TVMQSPATGK SGGGNISASH 120 SGGDDMGSTS TGSVEGATTT QCADLTGENE KLKKDNEKLS GELARAKKQC NELVSFLRES 180 LNVCPDVINR IIRQGTCGSS EDAVRFECIG DDDDENAVGE YEGNGGESLK LFGVWLKGEN 240 GRKRGRTHDN IKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-31 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_B | 4e-31 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
5d5v_D | 4e-31 | 5 | 101 | 25 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g10520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506090.1 | 0.0 | heat shock factor protein HSF24 | ||||
Swissprot | P22335 | 1e-97 | HSF24_SOLPE; Heat shock factor protein HSF24 | ||||
TrEMBL | A0A1S3UJ82 | 0.0 | A0A1S3UJ82_VIGRR; heat shock factor protein HSF24 | ||||
STRING | XP_007155926.1 | 1e-167 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7114 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 3e-72 | heat shock factor 4 |
Publications ? help Back to Top | |||
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