PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 557aa    MW: 63248.8 Da    PI: 8.8323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-12108177176
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k l++s+v +  ++ lp +f+++h  +  +++t++ledesg++++ k+i +k++    l++GW++F   ++L+e
  Vradi07g10460.1 108 FVKSLVRSHVASCFWMGLPVSFCKRHLPD--KDTTIILEDESGKEYNTKFIACKTG----LSAGWRQFSAVHKLQE 177
                      89************************534..5679***************777776....**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-13100177IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-15103177IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-18106177No hitNo description
SMARTSM010191.4E-11108204IPR003340B3 DNA binding domain
PfamPF023621.8E-9108177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MVVTDERNRD RANRRDVVEL PQYDQAVTVA YYEEELHAGD KQNKVVEKKY KILNNSPTKQ  60
ATSAEAQKFS SSMKAAVEGT SSRGEVMSSA VLQAEEVQSN LRPEFPSFVK SLVRSHVASC  120
FWMGLPVSFC KRHLPDKDTT IILEDESGKE YNTKFIACKT GLSAGWRQFS AVHKLQEVRE  180
PLQLKKNLGG HKATVVGLSW IRHTWSFIEG KDNMDTDLTC NSSKRKHGKS VPLEIQKKKK  240
ANLSRLRPKV MPSEEQSEND SEEALSEIME EFRMLEFEDV RGFENFSIIV DGASIDAEFP  300
DDVRNKYYRL CCSQHAFLHE NLIKGMNYKL VAGIISETVN IADAIKVSML CTPRMEYVNW  360
DKILLSFEHL GMNVEFLRIR LRRLVSIAYE ENDVSEAKKY LASRNEYSRA DDEIRNIEEK  420
LQELKGACNG FGAYLGSLKG KAENYHNKFR REVDAPCTPS AITKKKNRAS AFGHLWNSSL  480
GLLLTSTHIM VDFMYQSQVR FKAISGATSL ASQQRLGSGT NKSVKSTKTL NWDKEQSSWD  540
RISEIGLWKK AQPHHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223239KRKHGKSVPLEIQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022640209.10.0B3 domain-containing protein Os01g0234100 isoform X2
RefseqXP_022640210.10.0B3 domain-containing protein Os01g0234100 isoform X2
RefseqXP_022640211.10.0B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A3Q0F9E00.0A0A3Q0F9E0_VIGRR; B3 domain-containing protein Os01g0234100 isoform X2
STRINGXP_007155931.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-24B3 family protein