PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g08370.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ARF

Protein Properties

Length: 1000aa MW: 110145 Da PI: 6.7891

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g08370.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.2	2.7e-22	217	304	1	83
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Vradi07g08370.1 217 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 304 99***************************8544444..48********************************************96 PP
2	Auxin_resp	118.5	5.3e-39	415	498	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Vradi07g08370.1 415 AAHAAATSSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSIRRYMGTITGISDLDSVRWPNSHWRSVK 498 79*******************************9789****************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52058	1.93E-6	3	49	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.9E-8	3	72	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF101936	7.98E-41	202	307	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.9E-35	210	304	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.88E-21	216	303	No hit	No description
SMART	SM01019	2.6E-17	217	315	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.265	217	330	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.3E-20	217	304	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.3E-34	415	498	IPR010525	Auxin response factor
SuperFamily	SSF54277	5.56E-6	865	942	No hit	No description
PROSITE profile	PS51745	22.5	866	950	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence Send to blast
MNIGGLVSLR DFDLNGNEFV GLIPRGLNRM KLERLDLNNN HFMGLIPDFA ADKVSFKSND 60 FCLSKPGAMC AFEVMVLLDF LGGLGYPQIL VDSWSDNNSC DGPWLGLELG VVGVEEDCKR 120 MKGRNRINAF CSETGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVSWIIAST 180 EKSLWVLSRF DVTMQEQKEA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE 240 KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS 300 VLFICQMWIA LFTQSNGLGS KLLVLSFKNS AHAIQPIGFG PKNTGSFLMT QICASSMFGD 360 GSPLKTHQGS LIEFLLKNEK NQLLLGIRRA NRPQPVMPSS VLSSDSMHLG LLAAAAHAAA 420 TSSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS IRRYMGTITG 480 ISDLDSVRWP NSHWRSVKMQ VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP 540 WPPGMPSFHG LKDDDFGLNS SLMWLRDTDR GIPSLNFPGI GVSPWMQPRL DPSMVNYQTD 600 VYQAMAAAAL QDMWSSDPSK QHPTSLLQFQ QPQNFLNRTS PSVQTQILQQ SQSQQSFPNT 660 PQSQSPPMQA ISSLGHQQSF SDSNGNPVTN AIVSPLHSIL GSFPHDETSH LLNLPRTSWV 720 PVQSSTAWPP SKRVAVDPLL PSGASQCVLP QLEQLGQPQS TMAQNAITLP PFPSRECAIE 780 GSSDPQNHLL FGVNIEPSSL LMHNGLSSLK GVSSNCGPPT LPFQSSNYLN TTSTDSSMNP 840 GMTHNIGESG FLQTPENGGQ GNPPIKTFVK VYKSGSFGRS LDITKFTSYH ELRGELARMF 900 GLEGELEDPV RSGWQLVFVD QENDVLLLGD GPWPEFVNSV GCIKILSPQE VQQMGNNGLE 960 LLNSVPIQRL SNGVCDDYAG HEDPRSISTG ITTVGSLNY*

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence Send to blast

MNIGGLVSLR DFDLNGNEFV GLIPRGLNRM KLERLDLNNN HFMGLIPDFA ADKVSFKSND  60
FCLSKPGAMC AFEVMVLLDF LGGLGYPQIL VDSWSDNNSC DGPWLGLELG VVGVEEDCKR  120
MKGRNRINAF CSETGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVSWIIAST  180
EKSLWVLSRF DVTMQEQKEA YLPAELGTPS KQPTNYFCKI LTASDTSTHG GFSVPRRAAE  240
KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS  300
VLFICQMWIA LFTQSNGLGS KLLVLSFKNS AHAIQPIGFG PKNTGSFLMT QICASSMFGD  360
GSPLKTHQGS LIEFLLKNEK NQLLLGIRRA NRPQPVMPSS VLSSDSMHLG LLAAAAHAAA  420
TSSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF RMLFETEESS IRRYMGTITG  480
ISDLDSVRWP NSHWRSVKMQ VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP  540
WPPGMPSFHG LKDDDFGLNS SLMWLRDTDR GIPSLNFPGI GVSPWMQPRL DPSMVNYQTD  600
VYQAMAAAAL QDMWSSDPSK QHPTSLLQFQ QPQNFLNRTS PSVQTQILQQ SQSQQSFPNT  660
PQSQSPPMQA ISSLGHQQSF SDSNGNPVTN AIVSPLHSIL GSFPHDETSH LLNLPRTSWV  720
PVQSSTAWPP SKRVAVDPLL PSGASQCVLP QLEQLGQPQS TMAQNAITLP PFPSRECAIE  780
GSSDPQNHLL FGVNIEPSSL LMHNGLSSLK GVSSNCGPPT LPFQSSNYLN TTSTDSSMNP  840
GMTHNIGESG FLQTPENGGQ GNPPIKTFVK VYKSGSFGRS LDITKFTSYH ELRGELARMF  900
GLEGELEDPV RSGWQLVFVD QENDVLLLGD GPWPEFVNSV GCIKILSPQE VQQMGNNGLE  960
LLNSVPIQRL SNGVCDDYAG HEDPRSISTG ITTVGSLNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	5e-61	136	521	47	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16107481, ECO:0000269\|PubMed:16829592}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g08370.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR167. {ECO:0000269\|PubMed:17021043}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546066.1	0.0	auxin response factor 6 isoform X2
Refseq	XP_028203897.1	0.0	auxin response factor 6-like isoform X2
Swissprot	Q9FGV1	1e-146	ARFH_ARATH; Auxin response factor 8
TrEMBL	A0A371GHN2	0.0	A0A371GHN2_MUCPR; Auxin response factor (Fragment)
STRING	GLYMA15G09750.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1765	34	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.2	1e-125	auxin response factor 6

Publications ? help Back to Top
Liu N, et al. Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato. J. Exp. Bot., 2014. 65(9): p. 2507-20 [PMID:24723401] Minato N, et al. The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways. Sci Rep, 2014. 4: p. 7399 [PMID:25492247] Ortega-Amaro MA, et al. Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance. Front Plant Sci, 2014. 5: p. 782 [PMID:25653657] Wang Y, et al. MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development. Plant Physiol., 2015. 168(3): p. 984-99 [PMID:25941314] Barik S, et al. Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species. Sci Rep, 2015. 5: p. 14611 [PMID:26459056] Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants. Plant Physiol. Biochem., 2016. 104: p. 146-54 [PMID:27031426] Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8. Plant Physiol., 2016. 172(3): p. 1853-1861 [PMID:27688620] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Zhang GZ, et al. Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis. Plant Cell Rep., 2017. 36(12): p. 1995-2006 [PMID:29027578] Zheng K, et al. Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis. Front Plant Sci, 2017. 8: p. 1813 [PMID:29114256] Liu Z, et al. ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis. Plant Cell Physiol., 2018. 59(1): p. 179-189 [PMID:29145642] Ghelli R, et al. A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis. Plant Cell, 2018. 30(3): p. 620-637 [PMID:29514943]