PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g07770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | VOZ | ||||||||
Protein Properties | Length: 579aa MW: 63847.8 Da PI: 5.3005 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 445.3 | 7.4e-137 | 302 | 518 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkd+llf+alsak+qgk+vgipecegaatakspwna+e Vradi07g07770.1 302 PPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDNLLFSALSAKAQGKDVGIPECEGAATAKSPWNAPE 395 89******************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelk 188 lfdls+legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei+++da+alyrlelk Vradi07g07770.1 396 LFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACALYRLELK 489 ********************************************************************************************** PP VOZ 189 lvdekksakgkvskdsladlqkklgrlta 217 lvd+kk++k+k+++ds+adlqk++grl+a Vradi07g07770.1 490 LVDGKKNSKTKLASDSVADLQKQMGRLSA 518 ***************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MVAGWKEGDF LCLGFAGRTS GLAMKKVPKN SCKSASHRLF KDKAKNRVDD LQVMFLDLQF 60 ARKESRTVDA AVLEEQVHQM LREWKAELNE PSPASSLQQG GSLGSFSTDI CRLLQLCDEE 120 DDASSPLAAP KPEPNDQTLQ AEGEVVFQEV GKILSVEGSG GLDLRCVFTC CPEDQLNTAN 180 QQSGLGVRGD ITVTETLLWT KTSSMTLQLG QTLKMPQLIP GWSDTIKGQQ QYDFPLIDEC 240 KNSTSSVQNA AANNPDGHAL EYHQFDLHQD YDNGFYTGFN GTGYCEEDAI PHISSYLPSI 300 CPPPSAFLGP KCALWDCPRP AQGLDWCQDY CSSFHAALAL NEGPPGMAPV LRPGGIGLKD 360 NLLFSALSAK AQGKDVGIPE CEGAATAKSP WNAPELFDLS VLEGETIREW LFFDKPRRAF 420 ESGNRKQRSL PDYSGRGWHE SRKQVMNEFG GLKRSYYMDP QPLNHFEWHL YEYEISKCDA 480 CALYRLELKL VDGKKNSKTK LASDSVADLQ KQMGRLSAEF PHDNKRAAKG RTKVNSKVGI 540 GGVYSASRRV TTLNGAYEYG LAAPYDYLVE NMGDYYGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g07770.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014509818.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_022638928.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_022638929.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_022638930.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-177 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0L9TMC5 | 0.0 | A0A0L9TMC5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153891.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-179 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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