PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 593aa    MW: 65516 Da    PI: 8.6702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015262282323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ Cgk F++   L  H+ +H
  Vradi07g06570.1 262 CKECGKGFPSLKALCGHMASH 282
                      ******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-5163192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.02E-6163193No hitNo description
PfamPF139128.7E-7167191IPR007087Zinc finger, C2H2
SMARTSM003550.078167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115167194IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SMARTSM003550.043260282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.118260287IPR007087Zinc finger, C2H2
SuperFamilySSF576677.63E-7261282No hitNo description
PfamPF139122.1E-7262284IPR007087Zinc finger, C2H2
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
SuperFamilySSF576677.63E-7532559No hitNo description
PfamPF139126.5E-11537559IPR007087Zinc finger, C2H2
PROSITE profilePS501579.141537559IPR007087Zinc finger, C2H2
SMARTSM003550.28537559IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280539559IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDLRRFEVIN VLGINIILVC RKCPLLHLPH GIPVLIKHTH RNPIVPGIPD LQALVHGCGG  60
DDTLVVLVLV IGEDLVVVGG EDHGRPELAD VLDADGTVAR GRGKHVNMIG VPDGRVDTVG  120
VLLEGVDVGG AVESPKLDGV LSSQEEERKE SRRTGFTSRQ SMEERKYVCK YCSKRFPCGK  180
SLGGHIRTHM TEERSNADAD IFIKSDGFKK KRDLWCEDVV GNPIYGLREN PKKTMRFVHS  240
GARRGCASGV AGANYEKEER FCKECGKGFP SLKALCGHMA SHSDKEKRTI KFEDSDKKLK  300
LVARCLMLLS RDSTFKGRFA SVTECSDNNS VVLEAKSSSP DTRFGVSNGN YNFVSNNAYD  360
LAHNKLLRVN DIKLKSVEFG ASDNSGSRYF KHGPKTKVVD SDVSNDEFKW PKVGDKSSKY  420
TATLVKKEDL DYDGTDGTAR KFDSRKRSNY DSLDNKKIAN GFGNEVYGNS TKGWKYESLE  480
GERDYDSYDY SIEESHENSS ETESYPAPRS HNSKALNGKK STSKAKKKLK SKKSRDHECP  540
ICYKIFRSGQ ALGGHKRSHF IGGSEENTLV IKQAAPVVPC LIDLNLPAPV DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022638889.10.0uncharacterized protein LOC106767702 isoform X1
TrEMBLA0A3Q0F8G10.0A0A3Q0F8G1_VIGRR; uncharacterized protein LOC106767702 isoform X1
STRINGGLYMA20G03240.21e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-67C2H2-like zinc finger protein