PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g06540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25837.9 Da PI: 4.9594 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r +lg+++ ae+Aaka+++a++ l+g Vradi07g06540.1 42 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDNAEDAAKAYDEAARLLRG 91 799******.7*********33....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.62E-26 | 41 | 98 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-26 | 42 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-12 | 42 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-30 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.098 | 42 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MANKRKRWEK KSEEGNTEWE KLREEAASMA AAILGARRAN KRYIGVRQRP SGRWVAEIKD 60 TIQNIRLWLG TYDNAEDAAK AYDEAARLLR GANTRTNFFP SQSSPYVSAL PPKGSGEDFS 120 LGYNFAENVY DEEKKIVSGK GCDFQFLESG GSVSYSFSPF EIAEEMVGAI EENKYYDVDD 180 SALGRETLMM KYERKFSACF YTLTGVSECL RLQVGQENGK ELENFLGW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-13 | 41 | 98 | 4 | 62 | ATERF1 |
3gcc_A | 4e-13 | 41 | 98 | 4 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g06540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-165 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506353.1 | 6e-77 | uncharacterized protein LOC106766107 | ||||
TrEMBL | A0A1S3UJZ1 | 1e-75 | A0A1S3UJZ1_VIGRR; uncharacterized protein LOC106766107 | ||||
STRING | XP_007158631.1 | 6e-58 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-17 | related to AP2 11 |