PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06350.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 393aa    MW: 43877.6 Da    PI: 6.129
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06350.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.2e-1660105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Vradi07g06350.1  60 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-KRTDNEIKNYWNTHL 105
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-113567IPR009057Homeodomain-like
SuperFamilySSF466891.33E-2040115IPR009057Homeodomain-like
PROSITE profilePS500904.174154IPR017877Myb-like domain
PROSITE profilePS5129425.2955109IPR017930Myb domain
SMARTSM007174.9E-1659107IPR001005SANT/Myb domain
PfamPF002491.4E-1560105IPR001005SANT/Myb domain
CDDcd001671.10E-1162105No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2268106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MPFLESSLAF HHAFRGHSFI ILIFYQTLFG QHDAQLPCLQ RCGKSCRLRW TNYLRPDIKR  60
GKFSLQEEQT IIQLHALLGN RWSAIAAQLP KRTDNEIKNY WNTHLKKRLT RMGIDPTTHK  120
PKTDALGGSG GCQSKDAANL SHMAQWESAR LEAEARLVRE SRLQVQSNLG PGSNTQPARL  180
VLNKITTQQP SLPPCLDILK AWQSSWSKPQ LPTKESNPKM MHSMYAMMLS TEDTLESPTS  240
TLCFPGTTPT MLPVSNNNNI GVLFNENNDM FPLPSTNMDD GGLMKENTVL HLQDDDIMAA  300
VEAFRATTTM YDSNNNNVVP PTLPNGVVLE GLNNDEGLVY ESNDNLGAEE ENMAMMNGDG  360
SLCNVNLEEN NKHYWNNIFN LVNDPLSGPS VF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-184110940108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506348.10.0transcription factor MYB106-like
TrEMBLA0A1S3UJY70.0A0A1S3UJY7_VIGRR; transcription factor MYB106-like
STRINGXP_007158642.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.16e-70myb domain protein 106