PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06290.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 380aa    MW: 42111.4 Da    PI: 6.6804
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06290.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-1666111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Vradi07g06290.1  66 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 111
                      899*****************************.***********996 PP
2Myb_DNA-binding55.81.1e-17118161146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Vradi07g06290.1 118 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 161
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1761112IPR017930Myb domain
SMARTSM007172.9E-1465114IPR001005SANT/Myb domain
PfamPF002497.5E-1666111IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-2866159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2567119IPR009057Homeodomain-like
CDDcd001672.30E-1369110No hitNo description
PROSITE profilePS5129426.929113167IPR017930Myb domain
SMARTSM007171.8E-14117165IPR001005SANT/Myb domain
PfamPF002492.1E-14118160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-20120166IPR009057Homeodomain-like
CDDcd001677.23E-12120160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MREFLGRNFE EHPNSDGAEE GKGSDSSDDG GGEDSDKVNN NANNFNEENL NENSNSGSGH  60
SKLCARGHWR PAEDSKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA  120
FSEEEEERLM QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRRLS  180
QSVYRRVEEN TTSSNVSRDT ATAGTEPPPP YCLNLPNGGL ANNNIPSFPY AIAPFHGVAA  240
PPVGGGGVEF GLNGSPHMAA SKEVISTTKL APPHIAMYPQ QTPLDFFSGG RSNDMVGEYF  300
GQNHHQPSGF YSHYPQYLML MQQHQNNHNF YGFSNSTAQI LGSEASLSSV AEHRDQAMSS  360
DPPDAIPPPF IDFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-34661667107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506887.10.0uncharacterized protein LOC106766687
TrEMBLA0A1S3ULK90.0A0A1S3ULK9_VIGRR; uncharacterized protein LOC106766687
STRINGXP_007158647.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-72myb domain protein 105