PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g06270.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Dof

Protein Properties

Length: 457aa MW: 49360.7 Da PI: 7.5666

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g06270.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.5e-40	121	181	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s Vradi07g06270.1 121 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTS 181 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	119	178	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-32	123	179	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	125	179	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	127	163	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MSEVKGSAIK LFGRTISLPH NDSSAPPTLA SPSSSSSPPE PTSATQQHQE HQEPLTKELT 60 SLKDDDASSH ETTEDLKSAV SGILENPKTP SAETETSLQK SPENEEQSET SASEEKTPKK 120 PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNT 180 SAAAVSHYRQ ILMPEAFQGA TLNASSGLHN ALLGNGAAVL TFGPDTPLCD TMSSVLNIAE 240 RAQSCVSNGF HATEPNGSVD GCGHSTGVSV STTSNSSHAS SHESVDKRVE GFTPQLSYFP 300 GAPWPYPMPP PTFCQPRYPL SFYTTPAYWS CMPPSWNMSC MSSQSSVSNT VSAPILGKHS 360 RNGNIITPSN KQKEIHNSSE HNFLIPKTLR IDDPGEAAKS SMWSKLGTKN DRASSGGLFQ 420 AFPPKGNEMN HRVEASPQLQ ANPAALSRSL TFHERT*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MSEVKGSAIK LFGRTISLPH NDSSAPPTLA SPSSSSSPPE PTSATQQHQE HQEPLTKELT  60
SLKDDDASSH ETTEDLKSAV SGILENPKTP SAETETSLQK SPENEEQSET SASEEKTPKK  120
PDKILPCPRC NSMDTKFCYY NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGRRKNKNT  180
SAAAVSHYRQ ILMPEAFQGA TLNASSGLHN ALLGNGAAVL TFGPDTPLCD TMSSVLNIAE  240
RAQSCVSNGF HATEPNGSVD GCGHSTGVSV STTSNSSHAS SHESVDKRVE GFTPQLSYFP  300
GAPWPYPMPP PTFCQPRYPL SFYTTPAYWS CMPPSWNMSC MSSQSSVSNT VSAPILGKHS  360
RNGNIITPSN KQKEIHNSSE HNFLIPKTLR IDDPGEAAKS SMWSKLGTKN DRASSGGLFQ  420
AFPPKGNEMN HRVEASPQLQ ANPAALSRSL TFHERT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g06270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014506885.1	0.0	cyclic dof factor 1 isoform X2
TrEMBL	A0A1S3ULL7	0.0	A0A1S3ULL7_VIGRR; cyclic dof factor 1 isoform X2
STRING	XP_007158648.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-51	cycling DOF factor 2