PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g05650.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 383aa    MW: 43159.1 Da    PI: 9.4793
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g05650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.62.7e-0770119855
              AP2   8 wdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++++gr++A+++d  ++n   k+k  + g +  +e Aa+a++ a++k++g
  Vradi07g05650.1  70 RHRWTGRFEAHLWDkGTWNPtqKKKGKQ-GAYNDEEAAARAYDLAALKYWG 119
                      899***********87777785557777.666666**************98 PP
2AP252.41.3e-16162213155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Vradi07g05650.1 162 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 213
                      89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.48857127IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1169129IPR016177DNA-binding domain
SMARTSM003802.7E-1170133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-970128IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-18162223IPR016177DNA-binding domain
CDDcd000181.39E-25162223No hitNo description
PfamPF008474.7E-12162213IPR001471AP2/ERF domain
PROSITE profilePS5103218.953163221IPR001471AP2/ERF domain
SMARTSM003802.7E-26163227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18163222IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MELAPVKCEL SPRNHRLLVI DGSEVIAAKC VKRRRRCSSM SVLGGNEQQG EKLEEHKQLG  60
TATTVKRSSR HRWTGRFEAH LWDKGTWNPT QKKKGKQGAY NDEEAAARAY DLAALKYWGT  120
STFTNFPVSD YEKEIEIMKT VTKEEYLASL RRRSSGFSRG VSKYRGVARH HHNGRWEARI  180
GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSTYIRWLR PGTHPIASHD  240
PQPLATSNSM QTRGNIEVSN SNMHSFSSAE LDSTKKQDFS KYMNPLSPCN KPSSPTALGL  300
LLKSTVFREL MQRNLNSSGE EYPQEGNDGN GGTYYSENTS NSYFSSSDIN RLPNLESPED  360
TSLPMYHGTV QSLWNTSFNM SN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g05650.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0931681e-177BT093168.1 Soybean clone JCVI-FLGm-24O15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506312.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3UJU80.0A0A1S3UJU8_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_007153839.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-62AP2 family protein