PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g05010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 84aa    MW: 9568.28 Da    PI: 6.5047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g05010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-122524394
                     S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     g+sW++ ++ ++k  +++  +GWk+F+ +n L++gD ++F+l+++s+++  +
  Vradi07g05010.1  2 GKSWDMVYCGQNKL-QVFRPAGWKKFAVENCLRVGDACIFELMESSDKKVIF 52
                     89******544444.566779*********************9887776554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.407160IPR003340B3 DNA binding domain
CDDcd100173.70E-10258No hitNo description
Gene3DG3DSA:2.40.330.101.7E-11258IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-10253IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-11251IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MGKSWDMVYC GQNKLQVFRP AGWKKFAVEN CLRVGDACIF ELMESSDKKV IFEVQILRGD  60
IPSEILKNEM IMGQNREMPI VLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g05010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-122AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508354.11e-55B3 domain-containing protein Os06g0112300
TrEMBLA0A1S3UR053e-54A0A1S3UR05_VIGRR; B3 domain-containing protein Os06g0112300
STRINGXP_007157818.12e-48(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein