PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g04970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 168aa    MW: 18446.9 Da    PI: 7.9075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g04970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260147.14.8e-46131121100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++l
  Vradi07g04970.1  13 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQL 106
                      7********************************************************************************************* PP

           DUF260  95 allkee 100
                      a++++e
  Vradi07g04970.1 107 AVAQAE 112
                      *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.82312113IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKDGGRKQGA PSPCAACKLL RRRCAQDCVF APYFPADEPH KFANVHRVFG ASNVNKMLQE  60
LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQTQLAVAQ AEAVHLRVRQ  120
NASLYSPTSP TNSASQSSKI IHSQPKPIFD IDMDMVVDHT TYTDSMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4991127110LOB family transfactor Ramosa2.1
5ly0_B2e-4991127110LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g04970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310961e-157KT031096.1 Glycine max clone HN_CCL_198 AS2 transcription factor (Glyma07g35000.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507655.11e-124LOB domain-containing protein 4 isoform X2
SwissprotQ9SHE91e-71LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A1S3UNT51e-122A0A1S3UNT5_VIGRR; LOB domain-containing protein 4 isoform X2
STRINGGLYMA20G02850.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.15e-74LOB domain-containing protein 4