PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi07g03990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 415aa MW: 45628.8 Da PI: 10.3538 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 42 | 2.1e-13 | 335 | 388 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ + e+k++ ++ Vradi07g03990.1 335 RRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEINRELQRKQAEIKEMQKN 388 79***************************************9999999998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.8E-8 | 331 | 390 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.645 | 333 | 384 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 3.49E-25 | 335 | 389 | No hit | No description |
SuperFamily | SSF57959 | 3.24E-10 | 335 | 384 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-13 | 335 | 384 | No hit | No description |
Pfam | PF00170 | 3.7E-11 | 335 | 389 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 338 | 353 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MNFRNYDDNN PTWDAMHGKT PAANVGSLLR QPSSVYSLTF DEFQSTMGGV GKEFGSMNMD 60 ELLKNIWTAE ETQALTFSAG TGEGHNLNSI SGGLQRQGSL TLPRTLSQKT VDEVWRDLIK 120 ESGGANDGNG NGNGGSSIPQ RQPTLGEMTL EEFLVRAGVV REDVPQQQQQ IGKPNNNGWF 180 GNFPRPNNNN GLLLGFPQPN RSNGNMGERV VETNNNLAPK QPPPPPLSLN SNHSHRPTQQ 240 PPLFPKPANL AFAAPMHLFN SAPLANPGRR GGLIEHSLNA GLVGLASGNP EASPSRKISS 300 DVITRSNXDN SSLSPVHYSI NRGRKCSAIE KVVERRQRRM IKNRESAARS RARKQAYTFE 360 LEAEVAKLKE INRELQRKQA EIKEMQKNKQ DSDPACHPRV SKIQCLRRTL TGPW* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi07g03990.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022638765.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_022638766.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Swissprot | Q9M7Q4 | 4e-97 | AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5 | ||||
TrEMBL | A0A3Q0F5I4 | 0.0 | A0A3Q0F5I4_VIGRR; ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
STRING | XP_007156508.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1962 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G45249.1 | 8e-80 | abscisic acid responsive elements-binding factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|