PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g03150.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 507aa    MW: 56016.4 Da    PI: 4.9198
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g03150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36281192102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sws ++nsf+v+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Vradi07g03150.1  28 FLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 112
                      9********************999*****************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  Vradi07g03150.1 113 TISRRKP 119
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.3E-4022112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3623117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-6424117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-202851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3228117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEGAGSGGGE VSTAGPTPIT NANAPPPFLS KTYDMVDDPS TDSIVSWSPT NNSFIVWNPP  60
EFARDLLPKH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL LKTISRRKPA  120
HGHNHQQAQQ VHGQSSSVGA CVEVGKFGLE EEVEILKRDK NVLMQELVRL RQQQQSTDNQ  180
LQTMVQRLQG MEQRQQQMMS FLAKAVQSPG FLAQFVQQQN DSNRRISEAN KKRRLKQEGI  240
GEMEHRAASD GQIVKYQPMI NEAAKAIVRQ IMKLDASRLE SFGNNPDNYF IGVHSSPSSE  300
MDRGNSLSRS SGVTLQEVPP TKVQSSYVPS ATRTQGHGPS TGKSEILSSP QVAACEEVTY  360
PNRNVSVGEP NAPAIPVTQT DEIMPDIATI PDIVAGNILD IPQENYMASE TGGDGYMGPA  420
SFGVNMSLPL DFDSISTEPD IDDLLNNPHF WDDIVRTPVS EDIETNGPEV FYENEVQPTE  480
NGCEKSQHMD LLTEQMGLLS SDAKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2751174129Heat shock factor protein 1
5d5v_B1e-2751174129Heat shock factor protein 1
5d5v_D1e-2751174129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229236NKKRRLKQ
2230235KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g03150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510442.10.0heat shock factor protein HSF8
SwissprotQ401521e-169HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A1S3UWU90.0A0A1S3UWU9_VIGRR; heat shock factor protein HSF8
STRINGGLYMA16G13400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-135heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]