PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g02460.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 474aa    MW: 52403.4 Da    PI: 8.284
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g02460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1231e-38119178261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GGa+rnvPvG+g+rknk+s
  Vradi07g02460.1 119 PDKVLQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGAIRNVPVGAGKRKNKHS 178
                      78999*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-28116176IPR003851Zinc finger, Dof-type
PfamPF027013.7E-32120177IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.416123177IPR003851Zinc finger, Dof-type
PROSITE patternPS013610125161IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSQVRDSAIK LFGADIHTTH TPIKPTTLFP DLHSLTRIQP LPQPIIVMNG LEESTNDEVD  60
VPLNEEVSSK QTDSQDGNDT PRDTCKNPTL KLVGKVVHRT NEHRNAKRNI DQEKVFKKPD  120
KVLQCPRCNS LETKFCYFNN YNVNQPRHFC KNCQRYWTAG GAIRNVPVGA GKRKNKHSTL  180
QYYQKPVTPD GASAIQTHSG ASSDDMILSS NELSVTSRPI REREENPLSE PVETVLSLNG  240
QRKFDVDFPT VKDGEDPSSS SMRSNEMEQV GLAQHFNGLI PLHSFHYHSV PSWSYQWNPC  300
WNVKEFRSSS TSYTGSPTMM AVSGFSIPTV MQPAAPYSYS GFISNLAGQE EESSLIGSAF  360
SGISLSSSSV SNSTSSGNRS PTLGKHSRDG STPKEAAMKQ NLWVPKTVRI NGPEEAANSS  420
IWTTLGTKSE QNKIILKGSV FKSFESKTSA DDNQIRRTNP AAFSRSESFQ ESM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g02460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507648.10.0cyclic dof factor 1
TrEMBLA0A1S3UNJ90.0A0A1S3UNJ9_VIGRR; cyclic dof factor 1
STRINGXP_007156312.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.17e-53cycling DOF factor 3