PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g02270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 413aa    MW: 44067.4 Da    PI: 6.4457
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g02270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.22.8e-21303365163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e+++l se+
  Vradi07g02270.1 303 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENATLQAEVSRIRSEYEQLLSEN 365
                      89**********************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.6E-30193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-48132270No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-18297362No hitNo description
SMARTSM003383.1E-22303367IPR004827Basic-leucine zipper domain
PfamPF001708.0E-20303365IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093305368IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-11306362No hitNo description
CDDcd147024.35E-23308358No hitNo description
PROSITE patternPS000360310325IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGSSDMDKTP KEKESKTPPA TSQEQSPTTG INPDWSNFQT YSPIPPHSFL ASSPQAHPFM  60
WGVQHVMPPY GTPPHPYVAM YPHGGIYAHP SIPPGSYPFS PFAMASPNGI ADSSGNNPGS  120
IEVGAKPPEV KEKLPVKRSK GSASGGSLNM WITGKNSELG KTNGESANGI HSKSGDSASD  180
GTSEGSGENS QNDSQLKSGE RQDSFEDEPS QNGSSAPQNG VHSRPQTLVN QTMPAIPIST  240
ASAPGAIPGP TTNLNIGMDY WGTPTSSAIP ALHGKVSSTA VAGGMITAGS RDGVQPQIWL  300
QDERELKRQR RKQSNRESAR RSRLRKQAEC DELAQRADVL KEENATLQAE VSRIRSEYEQ  360
LLSENASLKE RLGEIPGVAT PGNEDVRSGQ NDQHVTNDTQ QSRQKEAMQG VH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319325RRSRLRK
2319326RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g02270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697900.0AF369790.1 Phaseolus vulgaris bZIP transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510078.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-151BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1S3UVF80.0A0A1S3UVF8_VIGRR; bZIP transcription factor 16 isoform X1
STRINGXP_007156287.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-142basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]