PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g02240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 363aa MW: 39221.7 Da PI: 8.1163 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.4 | 3.3e-07 | 37 | 58 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksFs++ +L H+r+H Vradi07g02240.1 37 TCSVCGKSFSSRKSLFGHMRSH 58 6********************9 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0018 | 207 | 226 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 kC +C+++F+++ +L+ H+ Vradi07g02240.1 207 KCRKCNTTFPSHQSLNDHLC 226 7*****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 12.113 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.6E-4 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 37 | 60 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.01E-9 | 37 | 58 | No hit | No description |
Pfam | PF13912 | 3.0E-7 | 38 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.01E-9 | 201 | 226 | No hit | No description |
SMART | SM00355 | 86 | 206 | 226 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MRIHNLSRKR VHGEKQSTGD AAKSKTAKWV MVDGNPTCSV CGKSFSSRKS LFGHMRSHTE 60 KAKKGIQSNA PIVGASSNST SSSTLSDDLA VDLSRVLRGW SVTAKRGRIS SSCSKSDSGL 120 EEGDEIEPRM QEAAYELMLL ARGSPKCEQE VVADQIQEHP FNKRGREEEL SHPILGNSDD 180 VKIKKRNRKK VKLTELASSG EGNKLAKCRK CNTTFPSHQS LNDHLCIVQN SKNIQSRSHG 240 VSATKEEHDA KTTIQGEKTG AGTVLEGRAV EAMRGYECEV LNESFSIGQG FGDHKRSDWT 300 SMGEAGSAQA TSSNMGNGEN CSKVLSFDLN QIPAMDGEEG VQSDLFIPAA NIMTSSSYDS 360 SC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g02240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014506202.1 | 0.0 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A1S3UJI7 | 0.0 | A0A1S3UJI7_VIGRR; zinc finger protein ZAT1-like | ||||
STRING | XP_007156283.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 2e-07 | C2H2 family protein |