PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g01160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 333aa    MW: 36854 Da    PI: 4.6472
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g01160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-07198245355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++   +r+RR+ri + +  L ellP++     +  s a iL   ++++k+Lq
  Vradi07g01160.1 198 EKARVTDRQRRQRIADNLKALHELLPNR-----TEGSQAYILDDIIDFVKYLQ 245
                      6678899********************9.....899****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-9193257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.33E-7193249No hitNo description
PROSITE profilePS5088811.795195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-10195254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-5197245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0014201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEQSNEENP LQLRTCDTGG TTNDVSHSTE GHLIPNPNFF IAASSGRNEN HWTCFPKPCH  60
NYVKYLSESS TYLPNTSTDY MMGGSYLPVG SITDGNVVNG SDKNFFYNDP GKVCAFKSIG  120
SSSNDLDIKK QVGFWRADEG EEVIKVETES SQNFLYAESH PLWTADSLGD KHNALHDPMV  180
MVGAPASLPK SGSNSSKEKA RVTDRQRRQR IADNLKALHE LLPNRTEGSQ AYILDDIIDF  240
VKYLQLQIKE QSGSRLQEES TGIPLVFHEG YGHYINQQML NEPLEEIMGK LLEEHSAAAG  300
QLLESKGLFL LPMALVDDLN EAMQTFGESA LV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g01160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-175AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507777.10.0transcription factor bHLH83-like isoform X1
RefseqXP_014507778.10.0transcription factor bHLH83-like isoform X1
TrEMBLA0A1S3UNY00.0A0A1S3UNY0_VIGRR; transcription factor bHLH83-like isoform X1
STRINGXP_007144615.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-20LJRHL1-like 2