PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g00880.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 231aa MW: 25966.9 Da PI: 8.3237

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g00880.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	122.1	7e-38	101	179	3	85
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsa 85 +g++sCqdCGnqakkdC h+RCRtCCksrg++C+thvkstWvpa+krrerqqqlaa+++++++ +++ skr+r+ ++ + Vradi07g00880.1 101 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQQQQ--QRDLSKRPRDPTAC--TR 179 6889****************************************************9887765..66777788776322..22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.0E-36	103	186	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.8E-27	105	147	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MAGLFSLGGG RGTNNNQQDN TTNNNEIPPA ETLFWYSKTD DVSSYRGFEL WNQQQEQHVM 60 PPHARPLLQR DLYSSGVGPS RGVSDDHSSS RSAFVAMRSA EGGISCQDCG NQAKKDCPHM 120 RCRTCCKSRG YECQTHVKST WVPASKRRER QQQLAALQEQ QQQQRDLSKR PRDPTACTRL 180 PSSVVRNSSL TQDLEKGKTI WELCGLYSTY FSFTNFVFLS FDVIVLQNEA *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g00880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014508290.1	1e-136	protein SHI RELATED SEQUENCE 1 isoform X1
Refseq	XP_014508291.1	1e-136	protein SHI RELATED SEQUENCE 1 isoform X2
Swissprot	K4B6C9	1e-41	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A1S3UQF5	1e-134	A0A1S3UQF5_VIGRR; protein SHI RELATED SEQUENCE 1 isoform X2
TrEMBL	A0A1S3UQJ7	1e-134	A0A1S3UQJ7_VIGRR; protein SHI RELATED SEQUENCE 1 isoform X1
STRING	XP_007156095.1	1e-113	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	1e-30	SHI-related sequence 7

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]