PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g00610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 70aa MW: 8218.22 Da PI: 8.9916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.1e-08 | 4 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ + +W +a+ +g R+ +++ks++ Vradi07g00610.1 4 SWTQRQNKLFEQALALYDREtpdRWQNVANVVG--RSVEEVKSHY 46 7*****************88************8..*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 12.855 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.06E-13 | 3 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.00E-5 | 4 | 50 | No hit | No description |
Pfam | PF00249 | 8.5E-6 | 4 | 46 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-4 | 4 | 56 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MASSWTQRQN KLFEQALALY DRETPDRWQN VANVVGRSVE EVKSHYEILK EDVKRIEHGQ 60 VPFPRYKTN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-26 | 5 | 68 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g00610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-102 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156054.1 | 2e-41 | hypothetical protein PHAVU_003G254400g | ||||
Swissprot | F4JVB8 | 3e-26 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A0L9TNY1 | 2e-43 | A0A0L9TNY1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R4H2 | 2e-43 | A0A0S3R4H2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A4D6KZ54 | 2e-43 | A0A4D6KZ54_VIGUN; Uncharacterized protein | ||||
STRING | GLYMA02G06240.1 | 6e-43 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-28 | RAD-like 1 |
Publications ? help Back to Top | |||
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