PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g00590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 309aa    MW: 34805.1 Da    PI: 8.823
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g00590.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.43.5e-3398154360
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                      ++rY+eClkNhAas+Ggh++DGCgEfmp+ geegt++++kCaAC+CHRnFHR+e+e e
  Vradi07g00590.1  98 TFRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESFKCAACECHRNFHRKEPEGE 154
                      789*************************8.999*********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2195150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-3099151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.7E-30100150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.751101150IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.79E-19235305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29239306IPR009057Homeodomain-like
TIGRFAMsTIGR015653.0E-26244301IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDMREQDKVI EMPTTLGYNL SNRNSSSSKL SSPIGERNDQ PPQSQTLIFS DSHHHHPLNP  60
PNPLQLPHPH RPRRDPDPTP ISPPVITTPR TQPHSTPTFR YRECLKNHAA SMGGHVTDGC  120
GEFMPNGEEG TPESFKCAAC ECHRNFHRKE PEGESSQHHV LNYHLTYPNK TNRNIVIHSP  180
QSHLQLPTPH LHGLVATPSG GPVQPAMLGF GGTPAESSSE DLNMFQTDDA GQLLSAQPPL  240
SSSKKRFRTK FSQQQKDKMM EFAEKLGWKI QRQDEQELHQ FCSQVGVKRQ VFKVWMHNSK  300
QAMKKKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-212433021675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g00590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022638386.10.0zinc-finger homeodomain protein 6
TrEMBLA0A3Q0F4F90.0A0A3Q0F4F9_VIGRR; zinc-finger homeodomain protein 6
STRINGXP_007156052.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.14e-54homeobox protein 24