PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g00400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 433aa MW: 44812 Da PI: 8.2235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Vradi07g00400.1 22 FVCEICNKGFQRDQNLQLHRRGH 44 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.47E-7 | 21 | 44 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 21 | 44 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 22 | 44 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 6.7E-5 | 22 | 44 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 63 | 93 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.47E-7 | 93 | 117 | No hit | No description |
SMART | SM00355 | 23 | 98 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
LSDPEAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSTKEVRK 60 RVYVCPEPAC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKEG 120 ARSHTVVTKA NEENDSMVLT DSPPPEVAAA AATTPAQSNS VISSGVQKQN PELPESNPPQ 180 VIEEPQATTA ISGSSGSNNN SSTNCSSSNV GATNNSNSSS VFASLFASST SSGTLQSQTP 240 AFCNLVRAMG PPDHRADITS PSSSEAISLC LSTSNASSIF ATGASLPQPA MSATALLQKA 300 AQMGAAATNA SLLRGFGIVS SSSASTPSGQ QNGLQWGQPQ LESESVSVPA GLGLSLPCDG 360 DSGLKELMTG TPSMFGPKHT TLDFLGLGMA AGGGLSALIT SIGGGLDVAA AAAAGTFGNG 420 EFSGKDIGRR SS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g00400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027916218.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9LVQ7 | 1e-126 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A4D6KZ44 | 0.0 | A0A4D6KZ44_VIGUN; Regulatory protein SWI5 | ||||
STRING | XP_007156028.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 4e-70 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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