PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g00400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 433aa    MW: 44812 Da    PI: 8.2235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g00400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-052244123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Vradi07g00400.1 22 FVCEICNKGFQRDQNLQLHRRGH 44
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.47E-72144No hitNo description
Gene3DG3DSA:3.30.160.601.4E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9492244IPR007087Zinc finger, C2H2
SMARTSM003550.0172244IPR015880Zinc finger, C2H2-like
PfamPF121716.7E-52244IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003552306393IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.47E-793117No hitNo description
SMARTSM003552398124IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
LSDPEAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSTKEVRK  60
RVYVCPEPAC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKEG  120
ARSHTVVTKA NEENDSMVLT DSPPPEVAAA AATTPAQSNS VISSGVQKQN PELPESNPPQ  180
VIEEPQATTA ISGSSGSNNN SSTNCSSSNV GATNNSNSSS VFASLFASST SSGTLQSQTP  240
AFCNLVRAMG PPDHRADITS PSSSEAISLC LSTSNASSIF ATGASLPQPA MSATALLQKA  300
AQMGAAATNA SLLRGFGIVS SSSASTPSGQ QNGLQWGQPQ LESESVSVPA GLGLSLPCDG  360
DSGLKELMTG TPSMFGPKHT TLDFLGLGMA AGGGLSALIT SIGGGLDVAA AAAAGTFGNG  420
EFSGKDIGRR SS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g00400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027916218.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-126IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A4D6KZ440.0A0A4D6KZ44_VIGUN; Regulatory protein SWI5
STRINGXP_007156028.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.14e-70C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]