PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g16880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 28926.9 Da PI: 5.2647 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 7.1e-16 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +kGVr++ +g+WvAeIr+p ng +r +lg+f eAa a++ a+++l+g Vradi06g16880.1 39 TFKGVRQRT-WGKWVAEIREP--NG-GARLWLGTFENSVEAAMAYDCAARQLYG 88 69****999.**********9..33.5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.19E-28 | 38 | 98 | No hit | No description |
SMART | SM00380 | 9.0E-32 | 39 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.495 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-19 | 39 | 96 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-28 | 40 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-11 | 40 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MLKSGMRMNA SKQVKKSAKA SSRKGCMRGK GGPENASCTF KGVRQRTWGK WVAEIREPNG 60 GARLWLGTFE NSVEAAMAYD CAARQLYGSD AKLNLPELHM ALALNFQFPP PNPQIPHMPP 120 SPQLQHSQIP PPSDISNLPP FDFINNLTDH TNIMFNPVLS MTPQHAIADS APVYASDSHV 180 AIPYESTTIP MAIHPSNPLD INDDKVDPFG GSSNVIPDPM FDDSIWAEAA MSLGFPLIPD 240 AAGINEAETF LEVGPWDSLQ TPWCM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 40 | 96 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-16 | 40 | 96 | 6 | 63 | ATERF1 |
3gcc_A | 1e-16 | 40 | 96 | 6 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g16880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503444.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A1S3UBV5 | 0.0 | A0A1S3UBV5_VIGRR; ethylene-responsive transcription factor ERF110 | ||||
STRING | XP_007160709.1 | 1e-122 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 3e-42 | ERF family protein |