PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g16840.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 270aa MW: 28835.2 Da PI: 7.3639

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g16840.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	175.8	2.1e-54	72	208	18	153
DUF702 18 dCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel..kskkqsalsstklssaeskkeletsslPee 108 d + CRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ + + ++skr+re+ ++ +l+++ ++ ++ + le+ ++P+e Vradi06g16840.1 72 DFVVPPCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQfRGDHSKRHRESieAVAAGGSLACAPVPITT--TGLEVGQFPPE 163 566667********************************99887765555999999999984345556667777777665..569999* PP DUF702 109 vsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++ Vradi06g16840.1 164 LNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGVD 208 *****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.3E-52	69	208	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-17	77	103	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.6E-25	159	207	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEKEYDVGEA SDGEVEKELS GDGDVQSTTG FSAARTNKKN PVRRHVENPG PSDGRNSRRC 60 IEFQTQNLAV PDFVVPPCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL AALQQQNQPP 120 QFRGDHSKRH RESIEAVAAG GSLACAPVPI TTTGLEVGQF PPELNSPAVF RCVKVSAMDA 180 PDERYAYQTA VNIGGHVFKG ILYDQGVDGP YASAGCEGSS GGGGEARPLA LMAATTTTTT 240 AGNPFDASLY PAPMNAFMAG TQFFPPPRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g16840.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014503441.1	1e-109	protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9SD40	6e-57	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1S3UBP1	1e-108	A0A1S3UBP1_VIGRR; protein SHI RELATED SEQUENCE 5-like
STRING	GLYMA14G40660.1	1e-102	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-49	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]