PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g16770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 553aa MW: 60573.7 Da PI: 7.3202 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.6e-11 | 396 | 454 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR++A rs +RK +i eLe kv++L++e ++L + +l+ ++lkse+ Vradi06g16770.1 396 KRAKRILANRLSAARSKERKMRYISELELKVQTLQTETTTLSTQFTKLQMDNSELKSEN 454 9********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.7E-14 | 392 | 456 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.955 | 394 | 457 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-10 | 396 | 454 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.3E-11 | 396 | 452 | No hit | No description |
SuperFamily | SSF57959 | 3.73E-10 | 396 | 451 | No hit | No description |
CDD | cd14703 | 3.09E-14 | 397 | 469 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 553 aa Download sequence Send to blast |
MEGVDQSNMK RNGSVFGSSS GANLRPPNRL NTAVPVSQLG VAENQKPYGI PPSHPNTNIS 60 PSSAYPQFFG SQSHSNSVSQ RLGSPNLSSV SSHSRSLSQP SFFSLDSLPP LSPSPYREPS 120 VSDPISIDLS AEESLVNPHA PLPNRGHALQ LGHSLPPRKG HRRSSSDSPL GISDFIQSAP 180 QLVPSRTWND RDVSRGGNSG YEKPIQLVLK EPIKSMDRVD GFGGEPVVGR KEDDSLDDLF 240 SAYMNLDNID TLNFSGMEDK DLDSRTSGSK TVESSDNEVE SHANGKTTGA QGASSSCSED 300 RREGVKRSSN GDIAPGSRHR RSYSLDSSIG NFHIGDESPK LPPLQNRGGQ HSPSNSIEGK 360 TSETSIEFGN GEFSSEELKK IKENDKLAEI AMADPKRAKR ILANRLSAAR SKERKMRYIS 420 ELELKVQTLQ TETTTLSTQF TKLQMDNSEL KSENNEYKLR IQALEQQSQL KDALNETLDA 480 EVRRLRRTVA ELGGESLLSS RMAQQLAISQ QMFPLQHQQH PNQLRHGQLH NSHSQEQTQT 540 QSQRQNGKAT AY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g16770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505030.1 | 0.0 | uncharacterized protein LOC106765057 | ||||
TrEMBL | A0A1S3UG69 | 0.0 | A0A1S3UG69_VIGRR; uncharacterized protein LOC106765057 | ||||
STRING | XP_007160692.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2272 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 1e-71 | bZIP family protein |