PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 588aa    MW: 66204.7 Da    PI: 8.6277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-1920106799
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       s++++s+rl +p  f+ +++g + +s   +l+ +sg++W+v+l   k+++  ++  GW++Fv +++L+ gD +vF++dg+  f  +v+vf+k
  Vradi06g15500.1  20 YSSAFSSHRLKIPDGFVCRMEGRTYGS--FSLTGPSGNVWKVQL--LKQDNDLFFHHGWSSFVMDHRLECGDLLVFRYDGHLHF--TVQVFDK 106
                      4899************99999998776..8999***********..********************************997666..9999997 PP

2B347.43.6e-15254346196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k gD+++F+l+++ e   +
  Vradi06g15500.1 254 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECEL--R 343
                      556667778888899*******98996..46999***************954566666799***********************9986665..4 PP

                      EEE CS
               B3  94 vkv 96 
                      v++
  Vradi06g15500.1 344 VHI 346
                      444 PP

3B337.15.8e-124965573193
                      .--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3  31 eesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      + +++++l++++g+ W+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+ + e    
  Vradi06g15500.1 496 TYKTEVILRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVTQCEM--Q 557
                      45579***************77666666799***********************9864333..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-2111109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.84614107IPR003340B3 DNA binding domain
SMARTSM010199.3E-1116107IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-2220112IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-1621106IPR003340B3 DNA binding domain
CDDcd100175.87E-1721105No hitNo description
Gene3DG3DSA:2.40.330.101.0E-21245347IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-23247348IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-18252346No hitNo description
SMARTSM010192.7E-10254352IPR003340B3 DNA binding domain
PfamPF023626.5E-12254346IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731254350IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-16473562IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-15473561IPR015300DNA-binding pseudobarrel domain
CDDcd100174.87E-11478560No hitNo description
SMARTSM010190.0012480564IPR003340B3 DNA binding domain
PfamPF023628.1E-9494555IPR003340B3 DNA binding domain
PROSITE profilePS5086310.137500564IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MGCDCGGKLS LRKPHFYEVY SSAFSSHRLK IPDGFVCRME GRTYGSFSLT GPSGNVWKVQ  60
LLKQDNDLFF HHGWSSFVMD HRLECGDLLV FRYDGHLHFT VQVFDKDACE KEAAFMSECS  120
QSSSDFEEIV GQKRDVKESC SLDIAFDGVA KKRRGCKYEN REIEPGFVGK ELLRYEVVRP  180
IRMFRETEET SKACLANDSL VPFHMDNRNE EAAILYRSGK EDGHYFLGGV SLSNVSAQDE  240
KKVAQSFTSK FPYFVRIMKS FNVSGSYTLN IPYQFSMAHL PNCKIKIILH NLKGEHWTVN  300
SVPTTRVHTS HTLCGGWMAF VRGNNIKIGD ICIFELVNEC ELRVHIAGIG KDGLEDDQVG  360
RVNAGHAGTT RYMPMNAKVN SKSIRKVDLS DKKWPKIGQE TVLSIDLKKS GRASNTSKKM  420
GLCPQSKAAH KKLGKFFLST PRRHRVEDEL SSQAKSGLRM LFALDEQRVA QAFSSPFPSF  480
VKIMKMFNFS AAHLPTYKTE VILRNSRGEC WTVNSVPDAK GRTVHTFCGG WMAFVRDNDI  540
NFGDTCIFEL VTQCEMQVYI SGVGKEGPDH QNAHLKLDRL SILPSTC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g15500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502687.10.0B3 domain-containing protein Os11g0197600
RefseqXP_022638284.10.0B3 domain-containing protein Os11g0197600
TrEMBLA0A1S3U9I40.0A0A1S3U9I4_VIGRR; B3 domain-containing protein Os11g0197600
STRINGXP_007160811.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-18B3 family protein