PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g15500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 588aa MW: 66204.7 Da PI: 8.6277 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.3e-19 | 20 | 106 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s++++s+rl +p f+ +++g + +s +l+ +sg++W+v+l k+++ ++ GW++Fv +++L+ gD +vF++dg+ f +v+vf+k Vradi06g15500.1 20 YSSAFSSHRLKIPDGFVCRMEGRTYGS--FSLTGPSGNVWKVQL--LKQDNDLFFHHGWSSFVMDHRLECGDLLVFRYDGHLHF--TVQVFDK 106 4899************99999998776..8999***********..********************************997666..9999997 PP | |||||||
2 | B3 | 47.4 | 3.6e-15 | 254 | 346 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ ++++ +v+ s l +p +f +h ++++++++l +++g+ W+v+ ++ +++l +GW Fv+ n++k gD+++F+l+++ e + Vradi06g15500.1 254 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECEL--R 343 556667778888899*******98996..46999***************954566666799***********************9986665..4 PP EEE CS B3 94 vkv 96 v++ Vradi06g15500.1 344 VHI 346 444 PP | |||||||
3 | B3 | 37.1 | 5.8e-12 | 496 | 557 | 31 | 93 |
.--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 31 eesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + +++++l++++g+ W+v+ + k+++ +++ +GW Fv++n+++ gD+++F+l+ + e Vradi06g15500.1 496 TYKTEVILRNSRGECWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVTQCEM--Q 557 45579***************77666666799***********************9864333..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-21 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.846 | 14 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-11 | 16 | 107 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-22 | 20 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-16 | 21 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.87E-17 | 21 | 105 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 245 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-23 | 247 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.22E-18 | 252 | 346 | No hit | No description |
SMART | SM01019 | 2.7E-10 | 254 | 352 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-12 | 254 | 346 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.731 | 254 | 350 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.04E-16 | 473 | 562 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-15 | 473 | 561 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.87E-11 | 478 | 560 | No hit | No description |
SMART | SM01019 | 0.0012 | 480 | 564 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-9 | 494 | 555 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.137 | 500 | 564 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MGCDCGGKLS LRKPHFYEVY SSAFSSHRLK IPDGFVCRME GRTYGSFSLT GPSGNVWKVQ 60 LLKQDNDLFF HHGWSSFVMD HRLECGDLLV FRYDGHLHFT VQVFDKDACE KEAAFMSECS 120 QSSSDFEEIV GQKRDVKESC SLDIAFDGVA KKRRGCKYEN REIEPGFVGK ELLRYEVVRP 180 IRMFRETEET SKACLANDSL VPFHMDNRNE EAAILYRSGK EDGHYFLGGV SLSNVSAQDE 240 KKVAQSFTSK FPYFVRIMKS FNVSGSYTLN IPYQFSMAHL PNCKIKIILH NLKGEHWTVN 300 SVPTTRVHTS HTLCGGWMAF VRGNNIKIGD ICIFELVNEC ELRVHIAGIG KDGLEDDQVG 360 RVNAGHAGTT RYMPMNAKVN SKSIRKVDLS DKKWPKIGQE TVLSIDLKKS GRASNTSKKM 420 GLCPQSKAAH KKLGKFFLST PRRHRVEDEL SSQAKSGLRM LFALDEQRVA QAFSSPFPSF 480 VKIMKMFNFS AAHLPTYKTE VILRNSRGEC WTVNSVPDAK GRTVHTFCGG WMAFVRDNDI 540 NFGDTCIFEL VTQCEMQVYI SGVGKEGPDH QNAHLKLDRL SILPSTC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g15500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502687.1 | 0.0 | B3 domain-containing protein Os11g0197600 | ||||
Refseq | XP_022638284.1 | 0.0 | B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A1S3U9I4 | 0.0 | A0A1S3U9I4_VIGRR; B3 domain-containing protein Os11g0197600 | ||||
STRING | XP_007160811.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-18 | B3 family protein |