PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14980.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 326aa    MW: 37484.3 Da    PI: 10.5966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05142165123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg+ ++++++Lk+H +  H
  Vradi06g14980.1 142 YTCGVCGRKCKTHMDLKKHFKQlH 165
                      9******************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.0E-565132IPR029060PIN domain-like
PROSITE profilePS5015710.99142170IPR007087Zinc finger, C2H2
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
CDDcd061671.34E-12156297No hitNo description
Gene3DG3DSA:3.40.50.10101.0E-5228293IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNNSLFLHNA NPIHFTFHSA FSQTQRRHVA SNKHLSQRYP RIQCFCVEID MVKNSQGIYA  60
PKSDKVVVLW DLDNKPPRGP PYNAAVSLKT LASRFGEVTD FSAYANRHAF VHLPQWVLHE  120
RRERRNLDIL ERKGVVTPSE TYTCGVCGRK CKTHMDLKKH FKQLHQRERE KKLNRLKSLK  180
GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE DKPQAADWAL  240
KRQMVHSMSR GIDWLFLVSD DSDFSEMLRR AREADLGTVV VGDWDRALGR HADLWVPWIS  300
CNVKNCNVKM FGMSGAAAVF VCPIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503564.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC106763903
TrEMBLA0A1S3UC760.0A0A1S3UC76_VIGRR; LOW QUALITY PROTEIN: uncharacterized protein LOC106763903
STRINGXP_007160873.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-147C2H2-like zinc finger protein