PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g14410.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 627aa    MW: 68219.5 Da    PI: 7.1031
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g14410.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.95.2e-08334383156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV++++++gr++A+++d      + +    +     +Aa+a++ a++k +++
  Vradi06g14410.1 334 SQYRGVTRHRWTGRYEAHLWDN-----SCKKEGQTRKG-RQAARAYDLAALKHHQH 383
                      78*******************2.....12223344444.9***********99875 PP
2AP2323.1e-10380423955
              AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi06g14410.1 380 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 423
                      6789******988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-5334379IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-6334382IPR016177DNA-binding domain
CDDcd000188.51E-22334433No hitNo description
Gene3DG3DSA:3.30.730.104.6E-4335380IPR001471AP2/ERF domain
PROSITE profilePS5103218.518335431IPR001471AP2/ERF domain
SMARTSM003803.3E-29335437IPR001471AP2/ERF domain
PRINTSPR003672.9E-6336347IPR001471AP2/ERF domain
PfamPF008471.0E-5380423IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-14381433IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-15381431IPR001471AP2/ERF domain
PRINTSPR003672.9E-6413433IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MKSMNDGNTD DGNNHNWLGF SLSPHMKMEI TSSADPPHHH HHHFYHHPQV SAAAAPCNTV  60
PTGFYISPSH LNPSGICYGV GENGAFHPPL AMMPLKSDGS LCIMEALTRS QTQEGFVGLV  120
EVMVPTTSPK LEDFLGGASI GAQDYGRHER EAMALSLDSA YYSSQNAEPE ANRGHPSSLG  180
LLSDPFRQQT HPYYSGLGIY QVEEEAKQPH VTVCSSQMPQ VVEEGVTCFK NWVPTRGYSS  240
TQQNPEQQQV NNSSGMGEGH GASGNAGVGC GELQSLSLSM SPGSQSSCVT VPTQISSSRT  300
ESVAGDAKKR GSAKLGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  360
GQTRKGRQAA RAYDLAALKH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK  420
FRGVNAVTNF DISRYDVERI MASNTLLAGE LARRNKDSEP RTEAIEYNGV SSQHEAETVN  480
NNENNEKGSS DWKMSLYHQQ QQQQSNNNCD MKTMKCGNYR GSAFSVSLQD LIGIDSVGSS  540
QAMIEESTKI GTHFSNPSSL VTSLSSSREG SPDKTGPTML FPKPPVGSKV VTSPIANGVS  600
VSSWFPTQMR PVSMSHLPVF AAWSDT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g14410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505232.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389146e-98ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A1S3UGS30.0A0A1S3UGS3_VIGRR; AP2-like ethylene-responsive transcription factor ANT
STRINGXP_007160953.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-78AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]