PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g13990.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 271aa MW: 30467.2 Da PI: 9.1281

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g13990.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F r nL+ H r H Vradi06g13990.1 70 FVCEICQKGFQRDQNLQLHRRGH 92 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.24E-5	68	93	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.032	70	92	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.2E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.658	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	111	141	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSNLTSASSE ISASSGIRND SGFFHAHQYS STSINQEPQP KKKRSLPGHP DPDAEVIALT 60 PETLLATNRF VCEICQKGFQ RDQNLQLHRR GHNLPWKLKK KNSKEVRKKV YVCPEATCVH 120 HDPSRALGDL TGIKKHFFRK HGEKKWKRDS FITHRAFCDA LAQESGRAVN PHSLLSSQSQ 180 FRSHGLQLEA ASSMVMKREQ DFNLLGQEIP SWLSSPTVLE ESMHSQTLRT TLDFSATQFH 240 CFVAKSLTNW RNSECSTFTS DDSETPLVSS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	108	KLKKKNSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g13990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-162	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022637953.1	1e-161	protein indeterminate-domain 12
Swissprot	Q9SCQ6	1e-74	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A3Q0F1X4	1e-160	A0A3Q0F1X4_VIGRR; protein indeterminate-domain 12
STRING	XP_007161022.1	1e-148	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-68	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]