PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g12770.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 287aa    MW: 31629.6 Da    PI: 8.2994
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g12770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR491.2e-15177215341
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +++CnCkkskC+k+YCeCf+ag++C  +C CedC N+ +
  Vradi06g12770.1 177 CRRCNCKKSKCIKLYCECFNAGVYCMGTCGCEDCLNRPQ 215
                      689*********************************875 PP
2TCR42.41.4e-13237277140
              TCR   1 kekkgCnCkkskClkkYCeCfa.agkkCseeCkCedCkNke 40 
                      ++k+gC+Ck+s ClkkYCeC++ a++ Cs+ C C++CkN+ 
  Vradi06g12770.1 237 RHKRGCKCKRSTCLKKYCECYQvAKVGCSSGCGCQGCKNSY 277
                      589******************945678************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.1E-11175216IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163426.168176278IPR005172CRC domain
PfamPF036382.1E-11178213IPR005172CRC domain
SMARTSM011142.7E-14237279IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.4E-10239276IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MQRTQESQTE NFEAPGYCWK SNFHQPLLET FIIDTQNVFD AKIDANTQHY GENLSSYKYL  60
ADPGDIDQIA IGSNNSHEKL NATSNNVKRM ELVESVSSTV NPQQGCGKLP LPDNSPGMNM  120
KRSILSSNVN GESTVEARID SHEGDATGAG NSEEFNKSPS PGKKKKKTSV PANQGGCRRC  180
NCKKSKCIKL YCECFNAGVY CMGTCGCEDC LNRPQYEGMI MECRRQIESR NQENSARHKR  240
GCKCKRSTCL KKYCECYQVA KVGCSSGCGC QGCKNSYGKK EGKSFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1118028614131Protein lin-54 homolog
5fd3_B1e-1118028614131Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g12770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-124AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161225.18e-77hypothetical protein PHAVU_001G052500g
TrEMBLA0A4D6MEH61e-111A0A4D6MEH6_VIGUN; Lin-54 family
STRINGXP_007161225.13e-76(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-34TESMIN/TSO1-like CXC 2