PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g11270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29331.4 Da PI: 8.1782 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.1 | 1.2e-51 | 9 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 ppGfrFhPtdeelvv+yL++k+ ++++ + +i+e+d+yk++Pw Lp ++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk++ + Vradi06g11270.1 9 PPGFRFHPTDEELVVHYLCRKCLNQQIAV-PIIAEIDLYKYDPWYLPGMALYGEKEWYFFSPRDRKYPNGSRPNRSAGTGYWKATGADKPIGK- 100 9*************************999.88***************6666689*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+apkgekt+W+mheyrl Vradi06g11270.1 101 -PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 .789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-56 | 3 | 134 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.517 | 8 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAAPQLHFPP GFRFHPTDEE LVVHYLCRKC LNQQIAVPII AEIDLYKYDP WYLPGMALYG 60 EKEWYFFSPR DRKYPNGSRP NRSAGTGYWK ATGADKPIGK PKPVGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLAEVDRSVR RKNSLRKSAV EKQPPVKIEC SELADEKPAI ARPYAEVKVA 180 DCVNFEGSDS VPRLLTMDSS CSEQVVSPEP ASEAQSEPKR SNNEFEYNYV DANLASEFHS 240 ANQMSPLQDI FMYLSKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-69 | 2 | 132 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g11270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-151 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503670.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-124 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1S3UCB4 | 0.0 | A0A1S3UCB4_VIGRR; NAC domain-containing protein 2-like | ||||
STRING | XP_007161475.1 | 1e-166 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-115 | NAC family protein |