PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g10500.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ZF-HD

Protein Properties

Length: 268aa MW: 29241.6 Da PI: 7.1655

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g10500.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.7	8.6e-31	52	108	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Efmp+ ge+gt +a+ CaAC+CHRnFHR+e + e Vradi06g10500.1 52 AVRYRECQKNHAVSFGGHAVDGCCEFMPA-GEDGTLEAVICAACNCHRNFHRKEIDGE 108 79************************9.999******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.6E-28	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-20	53	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-27	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.366	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.05E-21	183	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-31	184	256	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.7E-25	197	254	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEFDEQEEQE EEMGMPDPPV PAPVASYDSL GNSAARSKVG GEGRKGAFGA AAVRYRECQK 60 NHAVSFGGHA VDGCCEFMPA GEDGTLEAVI CAACNCHRNF HRKEIDGEMT SFHHRAQPPP 120 PLHHHHQFSP YYHHRVPQHP SAGGYLHHHL ATPPMAQHRP LALPAAASGG GLSREDEDIS 180 NPSSSGGGGG GGGGGSKKRF RTKFTQEQKD KMLAFAEQLG WRIQKHDESA VEQFCAETNV 240 ERKVLKVWMH NNKNTLACRG MAYRLQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-29	196	255	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	195	SGGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g10500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022638000.1	0.0	zinc-finger homeodomain protein 2 isoform X3
Swissprot	Q9SB61	4e-73	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A3Q0F1S5	0.0	A0A3Q0F1S5_VIGRR; zinc-finger homeodomain protein 2 isoform X3
STRING	XP_007141241.1	1e-147	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-64	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]