PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g09750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 30321.1 Da PI: 9.9526 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.2 | 5e-13 | 16 | 55 | 1 | 41 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+y+ Vradi06g09750.1 16 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-AIIAEVDLYN 55 79****************************.88*****996 PP | |||||||
2 | NAM | 81.8 | 1.4e-25 | 54 | 122 | 61 | 128 |
NAM 61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +rd+ky++g r+nra++sgyWkatg+dk+vl++ ++++vg+kk Lvfy g+ p+g kt+W+mheyrl Vradi06g09750.1 54 YNPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSgGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRL 122 7899*****************************9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-49 | 10 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.684 | 16 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-22 | 17 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MESTDSSTGS QHQPQLPPGF RFHPTDEELV VHYLKKKAAS VPLPVAIIAE VDLYNPRDRK 60 YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL VFYGGKPPRG IKTNWIMHEY 120 RLADNKPNNR PPGCDLGNKK NSLRLDDWVL CRIYKKSNTH STTGTTAGGM GASNSKAELP 180 FVPTMTHSSN TCKRTLSSLY WNDEDLAGTS SSNKRLNLES GDNNHGSVVR TDQDNGTATS 240 IVTLLNQLPQ TPSLHQQSML GSIGDGLLRT TYQIPGMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-56 | 10 | 158 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g09750.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020202626.1 | 1e-174 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 2e-86 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A151RBC4 | 1e-173 | A0A151RBC4_CAJCA; NAC domain-containing protein 18 | ||||
STRING | GLYMA13G35560.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 2e-87 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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