PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g09740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25387.5 Da PI: 8.7624 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 83.2 | 5.2e-26 | 30 | 95 | 62 | 128 |
NAM 62 skrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Vradi06g09740.1 30 HPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 95 689**************************9999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.327 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.92E-37 | 10 | 101 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-14 | 15 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGVPEKDPLA QLSLPPGFRF YPTDEELLVH PRDRKYPNGS RPNRVAGSGY WKATGTDKII 60 TTEGRKVGIK KALVFYVGKA PKGTKTNWIM HEYRLLDSSR KTTGTKAQQE EKVSIHQNLG 120 AGGLVDWANP AVLNSVGEFV SGNNQVVQEQ TQGMVNYGGC NDLYVPTFCH VESTLPQKME 180 EEVQSGVRSQ NNNNPWFVQN EFTQGYQNPV DTCGFKFPVQ AVGFGFRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-54 | 1 | 106 | 4 | 153 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-54 | 1 | 106 | 4 | 153 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-54 | 1 | 106 | 4 | 153 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-54 | 1 | 106 | 4 | 153 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-54 | 1 | 118 | 7 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-54 | 1 | 106 | 4 | 153 | NAC domain-containing protein 19 |
4dul_B | 8e-54 | 1 | 106 | 4 | 153 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g09740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-178 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014505280.1 | 1e-83 | NAC domain-containing protein 72 | ||||
TrEMBL | I1LUX9 | 1e-100 | I1LUX9_SOYBN; Uncharacterized protein | ||||
STRING | XP_007149614.1 | 3e-67 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40668 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-55 | NAC family protein |