PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g08080.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 379aa    MW: 43371.9 Da    PI: 4.917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g08080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11216259654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Vradi06g08080.1 216 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILGDTIDYMKEL 259
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-15214272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9216259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15217271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.02E-4217263No hitNo description
CDDcd048730.00181305367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MNNIYHIISN LQQAFHCALI NMLQLSTILS QGSISKTISH HTKREREMEL YDNDFLEESM  60
ALRREPWDTN PCSQENQLFS NAWSFDCFDQ NYQAFPSNSF SFQEVPQSYN LDYTFNEIYS  120
SLFDEFYAPQ IVDSSYSTLD ASHSTPSFVP HEDYPLSLME EEDPGLLGEE LHCLDLQATC  180
KMEPSHSPEM PVFNTDSSVE RKNRAKKLQG QPSKNLMAER RRRKRLNDRL SMLRSIVPKI  240
SKMDRTAILG DTIDYMKELL EKINTLKQEI EVDSNTATIF KDLKPNEILV RNSPKFDVER  300
RNANTRVEIC CAGKPGLLLS TVNTLETLGL EIQQCVISCF NDFTVQASCS EEQQKKILSS  360
EDIKQALFRS AGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218225ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g08080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504156.20.0transcription factor bHLH61-like isoform X1
TrEMBLA0A1S3UDR00.0A0A1S3UDR0_VIGRR; transcription factor bHLH61-like isoform X1
STRINGXP_007141308.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-82beta HLH protein 93