PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g07140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 334aa    MW: 36491 Da    PI: 7.8921
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g07140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.39.7e-06544639
         zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                     C+ +++++   +C+++  +lC +C  + H+       H++
  Vradi06g07140.1  5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                     *****************************65677777766 PP
2zf-B_box19.91.5e-064689441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                       C++++++++   C + +  lC++C    H g       H++++
  Vradi06g07140.1 46 LLCERCNSQPAFVRCVEEKISLCQNCDWLAH-GtsptsstHKRQT 89
                     57************************99999.5578888888765 PP
3CCT63.46.7e-22276319144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Vradi06g07140.1 276 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 319
                      899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
SMARTSM003361.7E-8447IPR000315B-box-type zinc finger
CDDcd000211.63E-7447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
CDDcd000212.19E-44790No hitNo description
SMARTSM003360.344890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.398276318IPR010402CCT domain
PfamPF062032.1E-16276318IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC  60
VEEKISLCQN CDWLAHGTSP TSSTHKRQTI NCYSGCPSAA EFSSIWSFFL DIPSMGEACE  120
QELGLMSINE NGNKSDLVPP EGTNVSGSSQ VTDLPTKGKF WAGTSSIPVS DSEPRILDQL  180
PEPGNECVPK GSSTGLVNAI QPACSNAASA DSMLSTKTEP IVCFTGRQSQ SNISFSGVTK  240
DSAGDYQDCD ASSMLLMGEP PWCPPCPESS LHSANRSNAV MRYKEKKKTR KFEKKVRYAS  300
RKARADVRRR VKGRFVKAGD VYDYDPLSQT RSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g07140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344483.11e-169zinc finger protein CONSTANS-LIKE 9-like isoform X3
SwissprotQ9LUA91e-125COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0L9T9C00.0A0A0L9T9C0_PHAAN; Uncharacterized protein
STRINGPOPTR_0014s16870.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-101B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]