PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g06390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 716aa    MW: 79674.2 Da    PI: 7.9492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g06390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19317417199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l ++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  ++
  Vradi06g06390.1 317 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLHMKDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQALKLNAGDIVIFSRID-PGG 408
                      99**************************555556677***************9989999999***9.********************987.777 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                      ++v++++r+
  Vradi06g06390.1 409 KFVLGFRRA 417
                      779999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-30314424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-20314416IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-24315416No hitNo description
SMARTSM010197.3E-24317418IPR003340B3 DNA binding domain
PROSITE profilePS5086310.884317418IPR003340B3 DNA binding domain
PfamPF023624.6E-16317417IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MELDVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC  60
NFCNKSIHCG CTISRFSFEY LDFGGIGCLT CLRASPFPLI QETGNSIRSI RSVKNHASDR  120
HTEHIDDRLF LDGSSKRKPM HMRRIVDGRE SSRWPQVKRD DIQSCIDLNR EEMRFSNVMK  180
PSNHSLKFTA LENNRPTWEN RSMHRSSSMN ISLGASSGNS VLPSALEIAE GRFDGKTSSS  240
SFHKGKRPLS IMPKPLMNAI NMNMESSNGM ISQERVARPP TDGKGKNMLL SRYWPRITDQ  300
ELQQLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLHMKDVK  360
GNEWTFQFRF WPNNNSRMYV LEGVTPCIQA LKLNAGDIVI FSRIDPGGKF VLGFRRASDS  420
TDTQDASAAH SIVLSTKETT FSGATAGNSY HDLLQTRKGN GDPYLNKCSE HFRLSTGIAE  480
RLRTENSEMV NKDSVQLPIS VSEKTQNIGP MCKRLLIHNE DAMELRVTWE EAQDLLCPAP  540
SIKSNIVTIE DQEFEEYEEP PVFGKRTRIN ARSSGSLSLA SEEVSPKELD NISVIRKGVL  600
DDDGDSSAGA TTKYPRHRSG CICIVCIQAS SGKGRHSPPC ITVKRRVDTL LARKKQLLGT  660
QKDDDIYDGD EGDGACLSEK EGNINKGCLK KGELSAGQID LNCRPDLDED MQVDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-662954242131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g06390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503048.10.0B3 domain-containing transcription repressor VAL2-like
TrEMBLA0A1S3UAJ20.0A0A1S3UAJ2_VIGRR; B3 domain-containing transcription repressor VAL2-like
STRINGXP_007142042.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-160HSI2-like 1