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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vradi06g05940.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 557aa MW: 63278.2 Da PI: 4.7191 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vradi06g05940.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 46.6 | 1.1e-14 | 10 | 47 | 54 | 91 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++
Vradi06g05940.1 10 KDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRK 47
5669*******************************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 557 aa
Download sequence Send
to blast |
MNWKSLLPGK DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKDAY ALCRVLKKTA 60 VIPQKVEGHY VNVPNVNQIT SDQSSSIELY SEGRGEDLVD SSNYFMSVDT CSPHNVGTET 120 PLTISGVTTM DHEKWSHFSS QDSMFSLPTS SYPNFGAIAY PPSKVDIALE CARMQHRFVM 180 PPLEVDDFPQ VGISELKMTQ ASSSMQGSRT ETDILQEILS VAQASQELIN QSNYSQEWCG 240 NDYYAPRDED FAFMVGTNYN HSSEIMNSVR YVDKAWEDAN TRTIEIGDMD EEFKVERNVE 300 NLRWVGMSKE DLEKMEEQNI VPIEDISSFQ TKMKENEVQE SEQHSNMEHN GTEINDFSLG 360 FINDDDPTEN LTEDGNKDDY SSSPSFEVVE EIKVNRGMLV STRQVAETFF QQMVPSQTVQ 420 VQLNTVMAHN HYVENAEAMV LIMEEQGSLR KVKAYVMGKL IKSSMTIASA IVFVFALVIM 480 HYAFIKGEVK FWNETYCSNC DKIMKKTNRS CQIMNESNDV WFIGIKSGKG LNAVLKKIGI 540 FLTIFFVLCA MWANHS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 4e-14 | 6 | 62 | 61 | 121 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-14 | 6 | 62 | 61 | 121 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-14 | 6 | 62 | 61 | 121 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-14 | 6 | 62 | 61 | 121 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swm_B | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swm_C | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swm_D | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swp_A | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swp_B | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swp_C | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
3swp_D | 5e-14 | 6 | 62 | 64 | 124 | NAC domain-containing protein 19 |
4dul_A | 4e-14 | 6 | 62 | 61 | 121 | NAC domain-containing protein 19 |
4dul_B | 4e-14 | 6 | 62 | 61 | 121 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |